Submitted:
26 March 2026
Posted:
27 March 2026
You are already at the latest version
Abstract
Keywords:
1. Introduction
2. Materials and Methods
2.1. Plant Material
2.2. Extraction of Phytochemicals
2.3. Static Simulated Digestion Assay
2.4. Biological Evaluation of P. brachystachyum Methanolic Extracts
2.4.1. Cell Viability in RAW 264.7, Caco-2, and HepG2 Cells
2.4.2. Cellular Antioxidant Activity (CAA)
2.4.3. Glucose Uptake in an Insulin-Resistant (IR) Cell Model of HepG2 Cells
2.4.4. Nitric Oxide Inhibition Assay
2.4.6. Determination of Phenolic Compounds Content by UPLC-MS
2.5. In Silico Evaluations
2.5.1. Selection of the Target Receptors and 3D Structure Retrieval
2.5.2. In Silico Selection and Retrieval of P. brachystachyum Compounds
2.5.3. Drug-Likeness, PASS Analysis, ADMET Properties, and Toxicity of the P. brachystachyum Compounds
2.5.4. Molecular Docking of P. brachystachyum and the Receptors α-Glucosidase and α-Amylase
2.5.5. Molecular Dynamics Simulation
3. Results
3.1. Quantification of Polyphenols Present in Non-Digested and Digested Extracts of Phoradendron brachystachyum by UPLC-MS
3.2. Cellular Antioxidant Activity (CAA)
3.3. Glucose Uptake in an Insulin-Resistant (IR) Cell Model of HepG2 Cells
3.4. Nitric Oxide Inhibition Assay
3.6. In Silico Analysis Results
3.6.1. Drug-Likeness, PASS Analysis, ADMET Properties, and Toxicity Results
3.6.2. Molecular Docking Analysis
3.6.3. Molecular Dynamics Simulation
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| AAPH | 2,2’-azobis-2-methylpropanimidamide dihydrochloride |
| ADMET | Absorption, distribution, metabolism, excretion, and toxicity |
| CAA | Cellular Antioxidant Activity |
| CTRL IR | Insulin-resistance control |
| CTRL Normal | Non-insulin-resistant or normal control |
| D | Digested |
| DCFH-DA | 2′,7′-dichlorodihydrofluorescein diacetate |
| DMEM | Dulbecco’s Modified Eagle Medium |
| ECG | Epicatechin-3-gallate |
| EGCG | Epigallocatechin 3-gallate / Epigallocatechin gallate |
| ERK | Extracellular signal-regulated kinases |
| FBS | Fetal bovine serum |
| IKK | IκB kinase |
| IR | Insulin-resistant |
| L | Leaves / leaf |
| LPS | Lipopolysaccharide |
| MAPK | Mitogen-activated protein kinase |
| MD | Molecular dynamics |
| MW | Molecular weight |
| NADPH | Nicotinamide adenine dinucleotide phosphate |
| NCD | Non-communicable disease |
| ND | Non-digested |
| NF-κB | Nuclear factor-kappa B |
| NO | Nitric oxide |
| NPT | Constant number, pressure, and temperature |
| NVT | Constant number, volume, and temperature |
| Pa | Probabilities of activity |
| PASS | Prediction of Activity Spectra for Substances |
| PBS | Phosphate-buffered saline |
| Pi | Probability of inactivity |
| QSAR | Quantitative structure–activity relationship |
| Rg | Radius of gyration |
| RMSD | Root mean square deviation |
| RMSF | Root mean square fluctuation |
| ROS | Reactive oxygen species |
| S | Stems / stem |
| TPSA | Topological polar surface area |
| WAP | Whole aerial parts |
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| Retention time (min) | m/z [M-H]- |
Compound | Leaf (μg/dry weight extract) | Stem (μg/dry weight extract) | Aerial parts (μg/dry weight extract) | |||
|---|---|---|---|---|---|---|---|---|
| Non-digested | Digested | Non-digested | Digested | Non-digested | Digested | |||
| 3.73 | 449.10056145 | Quercetin-3-O-rhamnoside | 1355.59 ± 142.88 c | 115.63 ± 12.41 d | 3605.11 ± 436.24 a | 529.28 ± 27.17 d | 2901.26 ± 213.15 b | 198.16 ± 23.98 d |
| 3.31 | 611.15338487 | Rutin | 260.75 ± 26.87 a | 0 c | 50.81 ± 3.10 b | 0c | 275.85 ± 19.34 a | 0c |
| 3.31 | 611.18977037 | Hesperidin | 243.94 ± 19.34 a | 0 b | 0 b | 0 b | 264.14 ± 25.05 a | 0 b |
| Total polyphenol content | 1,860.28 | 115.63 | 3,655.92 | 529.28 | 3,441.25 | 198.16 | ||
| Ligands | Receptor proteins | Binding energy (kca mol-1) |
Interacting amino acid residues | |
|---|---|---|---|---|
| Afzelin | α-amylase | -8.2 | Trp58, Ile235, Lys200, Leu162, His305, Glu233, Asp197 | |
| Ellagic Acid | α-amylase | -8.3 | Phe348, Ala310, Asp317, Arg267, Thr314, Arg346 | |
| Hispidulin | α-amylase | -8.7 | Gln63, Arg195, His299, Tyr62, Trp59 | |
| Hyperoside | α-amylase | -8.3 | Ser163, Leu165, Tyr62, Asp300, Arg195, Asp197, Glu233 | |
| Isorhamnetin 3-galactoside | α-amylase | -8.1 | Tyr151, Ile235, Leu162, His305, Glu233, Arg195, Asp197, His299 | |
| Isorhamnetin 3-o-glucoside | α-amylase | -8.2 | Ile235, Lys200, Leu162, Ser163, Arg195, Asp197, Asp300 | |
| Niranthin | α-amylase | -6.5 | His101, Leu162, Trp52, Leu165, His299, Asp197, Tyr62, Gln63 | |
| Phloretin | α-amylase | -7.3 | Ala198, Glu233, Asp197, Trp59 | |
| Quercetin 3-arabinoside | α-amylase | -8 | Arg195, Tyr62, Asp300, Leu165, Glu233, Gly306, His299 | |
| Quercetin 3-O-alpha-L-rhamnopyranoside | α-amylase | -8.2 | Leu162, Ile235, Lys200, Trp58, Asp197 | |
| Quercetin | α-amylase | -8.3 | Trp59, His305, Asp300, Asp197, Tyr62, Gln63 | |
| Quercetin-3-O-beta-D-galactopyranoside | α-amylase | -8.2 | Ser163, Leu162, Ile235, Lys200, Asp300, Asp197, Arg195, His305 | |
| Sakuranetin | α-amylase | -9 | Gln63, Tyr62, Asp300, His305, Trp59 | |
| Spiraeoside | α-amylase | -9 | Trp59, Leu162, Lys200, His201, Ile235, Tyr151 |
| Ligands | Receptor protein | Binding energies (kcal mol-1) | Interacting amino acid residues |
|---|---|---|---|
| Afzelin | α-glucosidase | -9.3 | Tyr71, Phe177, Glu276, Ala278, Thr215, Arg312 |
| Ellagic Acid | α-glucosidase | -8.8 | Arg312, Arg439, Ala278, Phe157 |
| Hispidulin | α-glucosidase | -8.4 | Phe311, His239, Asp408, Asp349, Phe157, Phe177, Arg312 |
| Hyperoside | α-glucosidase | -9 | Arg439, Asp349, Glu276, Asn241, Glu304, Arg312, Lys155 |
| Isorhamnetin 3-galactoside | α-glucosidase | -8.6 | Glu276, Asp349, Arg439, Tyr71, Phe158, Phe157, Arg312 |
| Isorhamnetin 3-o-glucoside | α-glucosidase | -9 | Arg312, Pro309, His239, Phe157, Ala278, Asn241, His279, Glu304, Phe311 |
| Niranthin | α-glucosidase | -7.2 | His348, Asp408, Arg312, Asp349, Tyr71, Arg439, Asp214, Asp68, Glu276 |
| Phloretin | α-glucosidase | -8.2 | Pro309, Asn241, Arg312 |
| Quercetin 3-arabinoside | α-glucosidase | -8.5 | His245, Ala278, His279, Asn412, Asp408, Arg312, Phe157 |
| Quercetin 3-O-alpha-L-rhamnopyranoside | α-glucosidase | -9.9 | His245, Ala278, His279, Asn412, Asp408, Arg312, Phe157 |
| Quercetin | α-glucosidase | -8.9 | His279, Arg439, Glu276, Asp349, Phe300, Phe157, Ala278 |
| Quercetin-3-O-beta-D-galactopyranoside | α-glucosidase | -9.7 | His279, Arg439, Glu276, Asp349, Phe300, Phe157, Ala278 |
| Sakuranetin | α-glucosidase | -8.5 | Arg312, Asp214, Tyr71, Phe177, Gln181, His111, Arg439, Asp349 |
| Spiraeoside | α-glucosidase | -9.9 | His348, Asp349, Phe157, Asp408, Arg312, Phe310, His279, Arg439, Tyr71 |
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