Submitted:
29 July 2024
Posted:
30 July 2024
You are already at the latest version
Abstract
Keywords:
1. Introduction
2. Results and Discussion
3.1. Cell Cytotoxicity
3.2. The Metabolomics Profile of V. amygdalina Leaf Extract
3.3. Protein Pathway Analysis
3.4. Apoptotic Cell Imaging and Apoptotic Protein Level Quantification
4. Materials and Methods
2.1. The Extraction of V. amygdalina Leaves
2.2. Cell Cultures and Cytotoxicity Test
2.3. The Metabolomics Profiling of V. amygdalina Leaf Extract
2.4. Sample Preparation for Label-Free Proteomics Analysis
2.5. LC-MS/MS Settings and Configurations for Proteomics Analysis
2.6. Biological Pathway Analysis
2.7. Imaging of Apoptotic Cells and Immuno-Based Early Apoptosis Protein Quantification
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Name | Formula | Molecular Weight | Peak area | Categories |
|---|---|---|---|---|
| Nandrolone decanoate | C28H44O3 | 428.3216 | 8.07E+08 | Steroids |
| Deacetylvindoline | C23H30N2O5 | 414.2143 | 7.28E+08 | Alkaloids |
| Rubiarbonone C | C32H50O5 | 536.3454 | 5.03E+08 | Terpenes and terpenoids |
| Glycyrrhetinic acid | C30H46O4 | 492.3183 | 4.49E+08 | Terpenes and terpenoids |
| Testosterone decanoate | C29H46O3 | 442.3378 | 2.23E+08 | Steroids |
| Psoralidin | C20H16O5 | 336.1055 | 1.82E+08 | Steroids |
| Ursolic acid | C30H48O3 | 456.3540 | 1.65E+08 | Terpenes and terpenoids |
| 3-Hydroxybupivicaine | C18H28N2O2 | 304.2111 | 1.64E+08 | Alkaloids |
| Phenylglyoxylic acid | C8H6O3 | 150.0316 | 1.53E+08 | Phenolic compounds |
| 2-Hydroxyoctanoic acid | C8H16O3 | 182.0888 | 1.17E+08 | Fatty acids and derivatives |
| Deidaclin | C12H17NO6 | 271.1056 | 7.48E+07 | Glycosides |
| Prostaglandin F2 | C21H36O5 | 368.2553 | 5.63E+07 | Steroids |
| Licochalcone B | C16H14O5 | 308.0693 | 5.09E+07 | Phenolic compounds |
| Prostaglandin E2-biotin | C35H58N4O6S | 684.4016 | 3.75E+07 | Steroids |
| Cafestol | C20H28O3 | 316.2089 | 2.44E+07 | Terpenes and terpenoids |
| Upstream Regulator | Molecule Type | z-score | p-value |
|---|---|---|---|
| HNF4A | Transcription regulator | 2.67 | 2.44E-108 |
| LARP1 | Translation regulator | 5.229 | 1.34E-68 |
| MYCN | Transcription regulator | -3.682 | 1.76E-56 |
| NFE2L2 | Transcription regulator | 5.012 | 3.11E-41 |
| MLXIPL | Transcription regulator | -4.433 | 4.52E-37 |
| XBP1 | Transcription regulator | 3.704 | 3.06E-28 |
| STK11 | Kinase | 2.964 | 1.22E-27 |
| CLPP | Peptidase | -2.411 | 1.31E-27 |
| PTEN | Phosphatase | 2.149 | 4.7E-16 |
| IL15 | Cytokine | 3.184 | 1.03E-14 |
| GO term | Biological process | False discovery rate |
|---|---|---|
| GO:0042981 | Regulation of apoptotic process | 0.00046 |
| GO:0010941 | Regulation of cell death | 0.00073 |
| GO:0010942 | Positive regulation of cell death | 0.0025 |
| GO:0043068 | Positive regulation of programmed cell death | 0.0037 |
| GO:2001233 | Regulation of apoptotic signaling pathway | 0.0062 |
| GO:0043065 | Positive regulation of apoptotic process | 0.0119 |
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