Liu, Z.; Gui, J.; Yan, Y.; Zhang, H.; He, J. Transcriptomic Analysis of the Dehydration Rate of Mature Rice (Oryza sativa) Seeds. Int. J. Mol. Sci.2023, 24, 11527.
Liu, Z.; Gui, J.; Yan, Y.; Zhang, H.; He, J. Transcriptomic Analysis of the Dehydration Rate of Mature Rice (Oryza sativa) Seeds. Int. J. Mol. Sci. 2023, 24, 11527.
Liu, Z.; Gui, J.; Yan, Y.; Zhang, H.; He, J. Transcriptomic Analysis of the Dehydration Rate of Mature Rice (Oryza sativa) Seeds. Int. J. Mol. Sci.2023, 24, 11527.
Liu, Z.; Gui, J.; Yan, Y.; Zhang, H.; He, J. Transcriptomic Analysis of the Dehydration Rate of Mature Rice (Oryza sativa) Seeds. Int. J. Mol. Sci. 2023, 24, 11527.
Abstract
The transcriptomic analysis of the dehydration rate of mature rice seeds was conducted to explore candidate genes related to the dehydration rate and provide a theoretical basis for breeding and utilization. In this study, we selected Baghlani Nangarhar, an extremely fast dehydration material, and Saturn, a slow dehydration material, based on the results of the previous studies of screening of 165 germplasm materials for dehydration rate phenotypes. Fast dehydration experiment on these two types of seeds was conducted. Four comparative groups were set up under control and dehydration conditions. The differentially expressed genes (DEGs) were quantified by transcriptome sequencing and quantitative real-time PCR (qRT-PCR). GO and KEGG analyses were carried out. The results showed that in Baghlani Nangarhar, 53 DEGs were screened, of which 33 were up-regulated and 20 were down-regulated. Similarly, in Saturn, 25 DEGs were screened, of which 19 were up-regulated and 6 down-regulated. The results of the GO analysis showed that the sites of action of the differentially expressed genes enriched in the fast dehydration modes were concentrated in the cytoplasm, internal components of the membrane and nucleosomes. They play regulatory roles in catalysis, binding, translocation, transcription, protein folding, degradation and replication. They are involved in adaptive responses to adverse external environments such as reactive oxygen species and high temperature. The KEGG analysis showed that the main metabolic pathways enriched are protein processing in the endoplasmic reticulum, amino acid biosynthesis, and oxidative phosphorylation. The key differentially expressed genes and the most important metabolic pathways in the rapidly and slowly dehydrated materials obtained in this study were protein processing in the endoplasmic reticulum and oxidative phosphorylation metabolism, which are presumed to have important regulatory roles in stress/defense, energy metabolism, protein synthesis/folding, and signal transduction during dehydration and drying of mature seeds. The results of this study could potentially provide a valuable reference for further research on the genes and metabolic pathways related to the dehydration rate of mature rice seeds and provide theoretical guidance for the selection and breeding of new rice germplasm that can be rapidly dehydrated at the mature stage.
Keywords
Rice seeds; dehydration rate; RNA-seq; DEGs
Subject
Biology and Life Sciences, Biology and Biotechnology
Copyright:
This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
