Preprint Article Version 1 Preserved in Portico This version is not peer-reviewed

Modeling Patient-Specific CAR-T Cell Dynamics: Multiphasic Kinetics Via Phenotypic Differentiation

Version 1 : Received: 23 September 2022 / Approved: 23 September 2022 / Online: 23 September 2022 (05:33:24 CEST)

A peer-reviewed article of this Preprint also exists.

Paixão, E.A.; Barros, L.R.C.; Fassoni, A.C.; Almeida, R.C. Modeling Patient-Specific CAR-T Cell Dynamics: Multiphasic Kinetics via Phenotypic Differentiation. Cancers 2022, 14, 5576. Paixão, E.A.; Barros, L.R.C.; Fassoni, A.C.; Almeida, R.C. Modeling Patient-Specific CAR-T Cell Dynamics: Multiphasic Kinetics via Phenotypic Differentiation. Cancers 2022, 14, 5576.

Abstract

Chimeric Antigen Receptor (CAR)-T cell immunotherapy revolutionized cancer treatment and consists of the genetic modification of T lymphocytes with a CAR gene, aiming to increase their ability to recognize and kill antigen-specific tumor cells. The dynamics of CAR-T cell responses in patients presents a multiphasic kinetics with distribution, expansion, contraction, and persistence phases. The characteristics and duration of each phase depend on the tumor type, the infused product, and on patient-specific characteristics. We present a mathematical model which describes the multiphasic CAR-T cell dynamics resulting from the interplay between CAR-T and tumor cells, considering patient and product heterogeneities. The CAR-T cell population is divided into functional (distributed and effector), memory, and exhausted CAR-T cell phenotypes. The model is able to describe the diversity of CAR-T cell dynamic behaviors in different patients and hematological cancers as well as their therapy outcomes. Our results indicate that the joint assessment of the area under the concentration-time curve in the first 28 days and the corresponding fraction of non-exhausted CAR-T cells may be considered as potential markers to classify therapy responses. Overall, the analysis of different CAR-T cell phenotypes can be a key aspect for a better understanding of the whole CAR-T cell dynamics.

Keywords

Hematological malignancies; treatment outcomes; CAR-T cell exhaustion; memory 22 pool, functional CAR-T cells; antigen dependent CAR-T expansion

Subject

Computer Science and Mathematics, Applied Mathematics

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