Version 1
: Received: 4 June 2021 / Approved: 4 June 2021 / Online: 4 June 2021 (15:33:17 CEST)
How to cite:
Zeng, C.; Takeda, A.; Sekine, K.; Osato, N.; Fukunaga, T.; Hamada, M. Bioinformatics Approaches for Determining the Functional Impact of Repetitive Elements on Non-coding RNAs. Preprints.org2021, 2021060145. https://doi.org/10.20944/preprints202106.0145.v1
Zeng, C.; Takeda, A.; Sekine, K.; Osato, N.; Fukunaga, T.; Hamada, M. Bioinformatics Approaches for Determining the Functional Impact of Repetitive Elements on Non-coding RNAs. Preprints.org 2021, 2021060145. https://doi.org/10.20944/preprints202106.0145.v1
Cite as:
Zeng, C.; Takeda, A.; Sekine, K.; Osato, N.; Fukunaga, T.; Hamada, M. Bioinformatics Approaches for Determining the Functional Impact of Repetitive Elements on Non-coding RNAs. Preprints.org2021, 2021060145. https://doi.org/10.20944/preprints202106.0145.v1
Zeng, C.; Takeda, A.; Sekine, K.; Osato, N.; Fukunaga, T.; Hamada, M. Bioinformatics Approaches for Determining the Functional Impact of Repetitive Elements on Non-coding RNAs. Preprints.org 2021, 2021060145. https://doi.org/10.20944/preprints202106.0145.v1
Abstract
With a large number of annotated non-coding RNAs (ncRNAs), repetitive sequences are found to constitute functional components (termed as repetitive elements) in ncRNAs that perform specific biological functions. Bioinformatics analysis is a powerful tool for improving our understanding of the role of repetitive elements in ncRNAs. This chapter summarizes recent findings that reveal the role of repetitive elements in ncRNAs. Furthermore, relevant bioinformatics approaches are systematically reviewed, which promises to provide valuable resources for studying the functional impact of repetitive elements on ncRNAs.
Biology and Life Sciences, Biochemistry and Molecular Biology
Copyright:
This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
The commenter has declared there is no conflict of interests.
Comment:
Thank you for contacting us. As I mentioned in the responding e-mail, we will consider adding these two databases to our manuscript before publication.
We encourage comments and feedback from a broad range of readers. See criteria for comments and our Diversity statement.
Commenter:
The commenter has declared there is no conflict of interests.
PlaNC-TE
https://doi.org/10.1093/database/bay078 http://planc-te.cp.utfpr.edu.br/
and
PlanTE-MIR DB
https://doi.org/10.1007/s10142-016-0480-5 http://bioinfo-tool.cp.utfpr.edu.br/plantemirdb/
Commenter:
The commenter has declared there is no conflict of interests.