Submitted:
31 July 2026
Posted:
03 August 2026
You are already at the latest version
Abstract
Keywords:
1. Introduction
2. Materials and Methods
3. Results
3.1. General Considerations: Why Specimen Quality Matters
3.2. Indications and Functions of Skin Biopsy
- Diagnosis: confirmation or exclusion of inflammatory and neoplastic dermatoses.
- Prognostic or staging: determination of critical parameters, such as the Breslow index in melanoma.
- Management and follow-up: defining surgical margins, monitoring drug efficacy, or detecting adverse effects.
- Medical safety: providing legal support and improving the doctor-patient relationship through objective data.
3.3. The Biopsy Pathway: From Biopsy Acquisition to Diagnosis
3.4. Clinical Information
3.4.1. Relevant Clinical Information: What the Dermatopathologist Needs to Know
3.4.2. Mandatory Clinical Data and Lesion-Specific Information
3.4.3. Temporal and Treatment-Related Data
3.4.4. Clinical Differential Diagnosis
3.5. Selection of the Biopsy Site
3.5.1. Activity and Disease-Driven Site Selection
3.5.2. Timing of Biopsy
3.5.3. Suspected Depth of Involvement
3.5.4. Clinical Heterogeneity
3.5.5. Special Anatomic Sites
3.6. The Importance of the Biopsy Acquisition Technique
3.6.1. Types of Biopsies
3.6.2. Number of Biopsies
3.6.3. Importance of Adequate Biopsy Depth
3.6.4. Influence of the Anesthetic Procedure on Biopsy Quality
3.7. Specimen Handling, Fixation and Transport
3.7.1. Specimen Handling
3.7.2. Fixation and Transport to the Histopathology Laboratory
3.7.3. Common Tissue Artifacts and How to Avoid Them
3.8. Macroscopic Examination, Orientation and Inking
3.9. Laboratory Processing Considerations
3.9.1. Additional Levels and Deeper Sections
3.9.2. Special Stains and Ancillary Studies
3.10. Clinicopathological Correlation
3.11. Reasons Why Biopsies Are Non-Diagnostic or Suboptimal
3.12. Practical Recommendations and Checklist
4. Future Perspectives
4.1. Digital Pathology and Image Sharing
4.2. Artificial Intelligence and Diagnostic Assistance
4.3. Teledermatopathology and Pre-Biopsy Consultation
4.4. Integration of Molecular Pathology into Routine Practice
4.5. Standardization of Biopsy Protocols
4.6. Towards an Integrated Model of Dermatopathology
5. Conclusions
Institutional Review Board Statement
Conflicts of Interest
Use of generative artificial intelligence
Abbreviations
| DIF | Direct immunofluorescence |
| MICHTM | Michel transport medium |
| TEN | Toxic epidermal necrolysis |
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| Suspected diagnosis | Where/How to biopsy | Notes/Caveat |
|---|---|---|
| Alport syndrome | Normal skin | Evaluate type IV collagen abnormalities |
| Atypical hemolytic uremic syndrome | Normal skin | May show thrombotic microangiopathy |
| Autoimmune bullous diseases and vasculitis: *DIF | Perilesional normal-appearing skin (<1 cm from blister) | Avoid necrotic or eroded skin. Send in saline or *MICHTM (never formalin) |
| Autoimmune bullous diseases: routine histology | Edge of an early vesicle or bulla, including adjacent intact skin | Avoid ulcerated or late lesions Never send the blister roof only |
| CADASIL | Random normal skin | Electron microscopy or immunostaining for NOTCH3 |
| Calciphylaxis | Deep biopsy | Be sure to include enough fat tissue |
| Connective tissue diseases | Established active lesion (6 > months) | Avoid old lesions. Consider DIF for lupus erythematosus |
| Cutaneous lymphoma | Untreated active lesions. For Intravascular large B-cell lymphoma random normal skin (≥2–3 biopsies) | Deep incisional biopsy preferred over superficial punch. Avoid necrotic excoriated skin |
| Dermatofibrosarcoma protuberans | Deep incisional biopsy including subcutis | Include subcutaneous fat tissue |
| Epidermolysis bullosa | Fresh blister | Select an early lesion (<24 h) |
| Epidermolysis bullosa (*DIF mapping) | Fresh or induced blister | Avoid broken blisters |
| Lentigo maligna | Multiple areas or broad shave including different colors | Several specimens from different areas increase sensitivity |
| Lysosomal storage disorders | Normal skin (often axillary) | Ultrastructural abnormalities in adnexal cells |
| Melanocytic lesions (suspected melanoma) | Complete excisional biopsy when possible | Diagnostic architectural features may be missed in partial biopsies |
| Molecular testing | Representative viable lesional tissue | Avoid necrotic areas. Histological sections are necessary to confirm the tumor presence |
| Morphea | Inflammatory border including adjacent indurated skin | If possible, include both the lilac ring and the sclerotic area in the same specimen |
| Mucosal lesions | Scalpel incisional or punch-biopsy | Avoid artifacts from electrosurgery and intralesional anesthetic injection |
| Non-scarring alopecia | Active area of hair loss | Avoid end-stage longstanding alopecia |
| Panniculitis | Deepest active nodule including subcutis | Deep incisional biopsy including subcutis. If punch is used, must be ≥6 mm and consider punch on punch |
| Pigmentary disorders (vitiligo, hypopigmentation) | Sample normal and affected skin from the edge of lesion or take two samples | Compare the differences, if possible within same specimen |
| Porphyria cutanea tarda | Intact blister on sun-exposed skin | Diagnostic features can be lost in old blisters |
| Pseudoxanthoma elasticum | Flexural normal skin | Von Kossa stain confirms calcium deposition |
| Scarring alopecia | Active lesion of recent onset with terminal hairs | Avoid end stage alopecia |
| Small fiber neuropathy | Distal leg normal skin | Search for reduced intraepidermal nerve fiber density |
| Steven Johnson syndrome/*TEN | Early lesions including full epidermal thickness | Late lesions may mimic other entities |
| Suspected bacterial, mycobacterial or fungal infection | Active untreated lesion | Consider sending fresh sterile tissue for microbiological study |
| Systemic amyloidosis | Abdominal fat pad or affected skin (purpura, plaques, or waxy lesions) | Higher yield than random normal skin |
| Vasculitis | Early purpuric lesion (<24-48 h for DIF; established lesion for H&E) | Timing and lesion age are critical. Avoid late lesions. Consider *DIF |
| *DIF: direct immunofluorescence; *TEN: toxic epidermal necrolysis; *MICHTM: Michel transport medium | ||
| The biopsy should preferably include… | Representative diseases / clinicopathological settings |
|---|---|
| Epidermis and superficial dermis | Psoriasis, lichen planus, pityriasis lichenoides, superficial dermatophyte infection, viral exanthems, interface dermatitis with mainly superficial involvement |
| Full-thickness dermis | Granuloma annulare, cutaneous sarcoidosis, necrobiosis lipoidica, interstitial granulomatous dermatitis, urticaria/urticarial vasculitis, drug eruptions |
| Deep dermis | Morphea, scleromyxedema, deep granulomatous dermatitis, perforating disorders, adnexal tumors with deep extension |
| Deep dermis and superficial subcutis | Medium-vessel vasculitis, cutaneous polyarteritis nodosa, livedoid vasculopathy, deep fungal/mycobacterial infection, lupus panniculitis, morphea profunda |
| Generous subcutaneous tissue | Panniculitis, erythema nodosum, subcutaneous panniculitis-like T-cell lymphoma, pancreatic panniculitis, alpha-1 antitrypsin deficiency panniculitis, calciphylaxis |
| Hair follicle-bearing skin extending into subcutis | Alopecia, folliculitis decalvans, dissecting cellulitis, hidradenitis suppurativa, follicular tumors, folliculotropic mycosis fungoides |
| Lesional edge including adjacent normal skin | Blistering diseases for routine histology, interface dermatitis, porokeratosis, annular lesions, vasculitis, ulcers |
| Perilesional normal-appearing skin | Direct immunofluorescence for autoimmune blistering disease, lupus erythematosus, vasculitis, dermatitis herpetiformis |
| Favor excisional or deep saucerization | Melanocytic tumors, suspected melanoma, adnexal neoplasms, cutaneous lymphoid infiltrates, Merkel cell carcinoma, poorly differentiated tumors |
| Edge and base of the ulcer | Pyoderma gangrenosum, infectious ulcers, vasculitic ulcers, neoplastic ulcers, hypertensive ischemic ulcer (Martorell ulcer) |
| Histochemical stain | Main diagnostic utility in dermatopathology |
|---|---|
| PAS | Fungi, basement membrane thickening, glycogen, and some adnexal tumors. |
| PAS-diastase | Distinguishes glycogen from diastase-resistant material; useful in storage/metabolic disorders and selected tumors. |
| Grocott (GMS) | Fungi, Pneumocystis, and some filamentous bacteria such as Nocardia. |
| Ziehl–Neelsen | Acid-fast mycobacteria, particularly when bacillary load is high. |
| Fite-Faraco | Leprosy and other partially acid-fast organisms. |
| Gram | Bacterial infections including impetigo, ecthyma, botryomycosis, and suppurative lesions. |
| Warthin–Starry / Steiner | Spirochetes and selected small bacteria (e.g., syphilis, bacillary angiomatosis). |
| Alcian blue | Dermal mucin in lupus erythematosus, dermatomyositis, scleromyxedema, and myxoid tumors. |
| Colloidal iron | Demonstration of dermal mucin, especially in connective tissue diseases. |
| Movat pentachrome | Elastic fibers, mucin, collagen, and fibrin; useful in vascular and connective tissue disorders. |
| Verhoeff–Van Gieson / Orcein | Elastic fibers in pseudoxanthoma elasticum, anetoderma, solar elastosis, and vascular lesions. |
| Masson trichrome | Collagen deposition and fibrosis in morphea, scars, and sclerosing disorders. |
| Congo red | Amyloid deposits in localized or systemic amyloidosis. |
| Von Kossa | Calcium deposition in calcinosis cutis and calciphylaxis. |
| Alizarin red | Calcium deposits; complementary to Von Kossa. |
| Perls (Prussian blue) | Hemosiderin in pigmented purpuric dermatoses, stasis dermatitis, and hemorrhagic lesions. |
| Fontana–Masson | Melanin in pigmentary disorders and melanocytic lesions. |
| Oil Red O / Sudan stains | Neutral lipids (requires frozen tissue); useful in xanthomas and lipid-rich lesions. |
| Toluidine blue / Giemsa | Mast cells, selected parasites, and inflammatory patterns. |
| Luxol fast blue | Myelin and nerve assessment in selected neural disorders and leprosy. |
| Technique | When should it be considered? | Specimen handling |
|---|---|---|
| Immunohistochemistry (IHC) | Classification of inflammatory dermatoses; melanocytic lesions; epithelial, adnexal and soft tissue tumors; cutaneous lymphomas; selected infectious agents; prognostic and predictive biomarkers. | Formalin-fixed paraffin-embedded (FFPE) tissue. Standard ancillary technique in routine dermatopathology. |
| Direct immunofluorescence (DIF) | Autoimmune blistering diseases; lupus erythematosus; dermatitis herpetiformis; cutaneous vasculitis; selected immune-mediated disorders. | Perilesional, non-ulcerated skin. Fresh tissue in Michel’s transport medium (or equivalent). Never place in formalin. |
| Microbiological cultures | Suspected bacterial, mycobacterial, fungal and selected viral infections. | Fresh sterile tissue. Do not place in formalin. Send promptly to the microbiology laboratory. |
| Electron microscopy (EM) | Selected genodermatoses, blistering diseases, ciliary disorders, storage diseases and occasional research applications. | Immediate fixation in glutaraldehyde. Reserved for selected indications. |
| Molecular pathology | Gene rearrangements, mutations, copy number alterations, clonality studies, pathogen detection and gene-expression profiling. | FFPE tissue is suitable for most assays; fresh tissue may be preferable for selected techniques. Ensure adequate lesional cell content. |
| Spatial transcriptomics / multiplex tissue imaging | Selected research applications; complex inflammatory dermatoses; tumor microenvironment studies; biomarker discovery. Not recommended for routine diagnosis. | Fresh frozen tissue is generally preferred; FFPE-compatible platforms are increasingly available. Tissue handling must follow platform-specific requirements to preserve RNA quality. |
| Common mistake | Potential consequence |
|---|---|
| Superficial biopsy for suspected panniculitis | Subcutaneous tissue absent; diagnosis may be impossible. |
| Submitting a DIF specimen in formalin | Direct immunofluorescence cannot be performed. |
| Biopsying an old vasculitic lesion | Characteristic vascular changes may have disappeared. |
| Sampling only the ulcer base | Predominantly non-specific necrosis and inflammation. |
| Obtaining cultures after prolonged antibiotic therapy | False-negative microbiological results. |
| Biopsying only the blister roof | Loss of the diagnostic dermoepidermal interface. |
| Providing insufficient clinical information | Limited clinicopathological correlation and lower diagnostic accuracy. |
| Excessive tissue crush with forceps | Cytological distortion and architectural artifacts. |
| Electrocautery applied to diagnostic tissue | Thermal artifact compromising histological interpretation and margin assessment. |
| Tiny or fragmented biopsy specimen | Poor orientation and inadequate assessment of lesion architecture. |
| Phase | Recommendations |
| Specimen identification | • Confirm the patient’s identity. • Verify consistency between specimen container and pathology request form. • Label the container immediately after specimen collection. • Avoid unlabeled containers or those labeled retrospectively. |
| Tissue handling | • Minimize direct manipulation of the specimen. • Avoid crush artifact caused by traumatic forceps. • Use appropriate instruments to reduce mechanical artifacts. • Preserve specimen integrity and avoid unnecessary fragmentation. |
| Fixation | • Place the specimen in fixative immediately after collection. • Use an adequate volume of fixative (ideally ≥10 times the tissue volume). • Ensure the specimen is completely submerged. • Avoid prolonged delays before fixation. • Use appropriate transport media when special techniques are required (e.g., DIF). |
| Orientation | • Mark specimen orientation when diagnostically relevant. • Use sutures, inks, or conventional markers to identify margins. • Clearly inform the laboratory of the meaning of each marker. |
| Transport | • Ensure rapid and safe transport to the laboratory. • Avoid extreme temperatures. • Prevent specimen loss and fixative leakage. • Verify correspondence between each container and its pathology request form. |
| Final verification | • Confirm that the specimen is correctly identified, adequately fixed, and accompanied by the necessary clinical documentation before submission to the laboratory. |
| Information | Diagnostic value |
|---|---|
| Age and sex | Provide clinical context for histopathological findings and help refine the differential diagnosis. |
| Relevant medical history | Facilitate interpretation of lesions associated with systemic diseases, immunosuppression, or previous malignancies. |
| Precise anatomical location | Many diseases show characteristic anatomical distributions with specific diagnostic implications. |
| Duration of the lesion | Histopathological findings may vary considerably according to the stage of lesion evolution. |
| Growth rate and recent changes | Help interpret inflammatory, infectious, and neoplastic processes. |
| Associated symptoms | Pruritus, pain, or other symptoms may help guide the differential diagnosis. |
| Clinical description | Should include morphology, color, size, number of lesions, and distribution. |
| Clinical differential diagnosis | Allows integration of histopathological findings into the clinical context and optimizes clinicopathological correlation. |
| Previous treatments | Corticosteroids, immunosuppressants, biologics, antibiotics, cryotherapy, laser therapy, and other procedures may modify histopathological features. |
| Dermoscopic findings | Particularly useful in melanocytic lesions and cutaneous tumors. |
| Relevant ancillary studies | Laboratory tests, microbiology, immunology, or imaging studies may provide decisive information for interpretation. |
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