Submitted:
19 June 2026
Posted:
23 June 2026
You are already at the latest version
Abstract
Keywords:
1. Introduction
2. Methods
3. Current Standard of Care in Bladder Cancer and Unmet Needs
4. Long Non-Coding RNAs as Clinical Biomarkers
5. Urine-Based lncRNA Candidates and Panels—Diagnosis and Screening
Single lncRNA Urine Markers with Replicated Evidence
Multi-lncRNA Panels and Combined Strategies.
6. lncRNAs for Risk Stratification (Prognosis, Recurrence, Progression)
7. lncRNAs for Treatment Guidance (Predictive Biomarkers) and Mortality Prediction
10. Conclusions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| AUC | area under the receiver-operating characteristic curve |
| AUA | American Urological Association; |
| BC | bladder cancer; |
| BCG | bacillus Calmette–Guérin; |
| BCYRN1 | brain cytoplasmic RNA 1; |
| CCDC148-AS1 | CCDC148 antisense RNA 1; |
| ceRNA | competing endogenous RNA; |
| CIS | carcinoma in situ; |
| CT | computed tomography; |
| CTCs | circulating tumor cells; |
| DDP | cisplatin; |
| EAU | European Association of Urology; |
| EMT | epithelial–mesenchymal transition; |
| EVs | extracellular vesicles; |
| EZH2 | enhancer of zeste homolog 2; |
| FFPE | formalin-fixed paraffin-embedded; |
| FGFR | fibroblast growth factor receptor; |
| FGFR3-AS1 | FGFR3 antisense RNA 1; |
| GAS5 | growth arrest-specific transcript 5; |
| H3K27 | histone H3 lysine 27; |
| H3K27me3 | histone H3 lysine 27 trimethylation; |
| HK2 | hexokinase 2; |
| HMGB1 | high mobility group box 1; |
| HOTAIR | HOX transcript antisense RNA; |
| HR | hazard ratio; |
| HYMA1 | HYMAI imprinted transcript; |
| IFNγ | interferon-gamma; |
| INCR1 | interferon-stimulated noncoding RNA 1; |
| LINC00857 | long intergenic non-protein coding RNA 857; |
| LMAN1 | lectin mannose-binding 1; |
| lncRNA | long non-coding RNA; |
| MAFG-AS1 | MAFG antisense RNA 1; |
| MALAT1 | metastasis-associated lung adenocarcinoma transcript 1; |
| MIBC | muscle-invasive bladder cancer; |
| MIR4435-2HG | MIR4435-2 host gene; |
| miR | miRNA |
| microRNA; | |
| mRNA | messenger RNA; |
| MST1P2 | macrophage-stimulating 1 pseudogene 2; |
| NAC/AC | neoadjuvant chemotherapy/adjuvant chemotherapy; |
| ncRNA | non-coding RNA; |
| NEAT1 | nuclear paraspeckle assembly transcript 1; |
| NGS | next-generation sequencing; |
| NMIBC | non-muscle-invasive bladder cancer; |
| NMP22 | nuclear matrix protein 22; |
| NPV | negative predictive value; |
| PCAT-1 | prostate cancer-associated transcript 1; |
| PCR | polymerase chain reaction; |
| PD-1 | programmed cell death protein 1; |
| PD-L1 | programmed death-ligand 1; |
| PRC2 | polycomb repressive complex 2; |
| PVT1 | plasmacytoma variant translocation 1; |
| qRT-PCR | quantitative reverse-transcription polymerase chain reaction; |
| RFS | recurrence-free survival; |
| RMRP | RNA component of mitochondrial RNA-processing endoribonuclease; |
| RNA | ribonucleic acid; |
| ROC | receiver-operating characteristic; |
| RT-RAA | reverse transcription recombinase-aided amplification; |
| SCARNA10 | small Cajal body-specific RNA 10; |
| SIRT1 | sirtuin 1; |
| SNHG16 | small nucleolar RNA host gene 16; |
| SPRY4-IT1 | SPRY4 intronic transcript 1; |
| STAT3 | signal transducer and activator of transcription 3; |
| SUMO1P3 | small ubiquitin-like modifier 1 pseudogene 3; |
| SUZ12 | suppressor of zeste 12; |
| SVM | support vector machine; |
| TCGA | The Cancer Genome Atlas; |
| TERC | telomerase RNA component; |
| TERT | telomerase reverse transcriptase; |
| TIDE | tumor immune dysfunction and exclusion; |
| TUG1 | taurine-upregulated gene 1; |
| TUR | transurethral resection; |
| TURBT | transurethral resection of bladder tumor; |
| UBC1 | ubiquitin C pseudogene 1; |
| UCA1 | urothelial carcinoma-associated 1; |
| uEVs | urinary extracellular vesicles; |
| UNMIBC | up-regulated in non-muscle-invasive bladder cancer; |
| UTI | urinary tract infection; |
| VEGF-C | vascular endothelial growth factor C; |
| Wnt | wingless/integrated signaling pathway. |
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| Panel | Biological material/ model |
Clinical application | Diagnostic performance | Ref. |
|---|---|---|---|---|
| G023016, RP11-553N19.1, LINC0087 | Serum exosomes; NMIBC patients | Diagnosis of NMIBC | AUC = 0.809–0.827 | [67] |
| MALAT1, PCAT-1, SPRY4-IT1 | Urinary extracellular vesicles (uEVs); BC patients vs controls |
Diagnosis and recurrence prediction | AUC up to 0.854 Recurrence is associated with PCAT-1 and MALAT1 |
[91] |
| UCA1-201, HOTAIR, HYMA1, MALAT1 | Urinary cell-free RNA; BC vs cystitis | Differential diagnosis | Sensitivity = 95.7%; specificity = 94.3% | [95] |
| RMRP, UCA1, MALAT1 | Urinary extracellular vesicles (uEVs); BC patients vs controls | Diagnosis of BC | AUC = 0.875 (SVM model) | [97] |
| uc004cox.4 + GAS5 | Urinary cell-free RNA; BC patients vs controls |
Diagnosis and prognosis | AUC = 0.885 Outperforms urine cytology; associated with poor recurrence-free survival (RFS) in NMIBC |
[99] |
| CCDC148-AS1, XLOC_006419, RP5-1148A21.3 | Urinary extracellular vesicles (uEVs); NMIBC patients | Diagnosis of NMIBC | AUC up to 0.873 outperforms urine cytology |
[15] |
| MALAT1, SCARNA10, LINC00963, LINC01578 | Urinary extracellular vesicles (uEVs); BC patients | Diagnosis (BC and high-grade tumours) | AUC = 0.900 (BC) AUC = 0.917 (high-grade) |
[45] |
| PCAT-1, UBC1, SNHG16 | Serum; BC patients vs controls | Diagnosis and recurrence prediction | AUC up to 0.857 UBC1 associated with recurrence risk |
[108] |
| lncRNA | Biological material/ model | Expression | Mechanism | Functional role/ clinical relevance | References |
|---|---|---|---|---|---|
| UNMIBC | NMIBC tissues; BC cell lines; xenograft model | ↑ | PRC2/EZH2-mediated epigenetic regulation | Promotes tumour growth and is associated with recurrence | [52] |
| UCA1 | BC cell lines | ↑ | ceRNA mechanism via miR-143 regulating glycolysis | Enhances glycolysis (Warburg effect), proliferation, and tumour progression | [82] |
| TERC | Urinary exosomes (BC vs controls) | ↑ | T Telomerase-associated regulation (TERC/TERT axis) |
Diagnostic and prognostic biomarker | [74] |
| SNHG16 | Urinary exosomes (BC vs healthy); BC cell lines | ↑ | Not fully elucidated | Tumour-promoting, potential diagnostics biomarker | [16] |
| SUMO1P3 | Urine samples (NMIBC/MIBC) | ↑ | miRNA-mediated regulatory axis (miR-320a) | Associated with tumour aggressiveness and progression | [88] |
| HOTAIR | NMIBC/ MIBC tissues; TCGA datasets; BC cell lines | ↑ | PRC2/EZH2-mediated epigenetic regulation | Associated with recurrence and poor overall survival | [105] |
| PVT1 | MIBC tissues | ↑ | Not fully elucidated | Associated with advanced stage, metastasis, and Poor prognosis | [110] |
| MIR4435-2HG | TCGA and MiTranscriptome datasets; NMIBC/ MIBC cohorts | ↑ | Not fully elucidated | Prognostic biomarker, associated with response to BCG therapy | [113] |
| BCYRN1 | BC cell lines | ↑ | Cell cycle–associated regulation | Promotes proliferation and invasion | [115] |
| MST1P2 | Cisplatin-resistant BC cell lines | ↑ | miR-133b/SIRT1/p53 signalling axis |
Mediates cisplatin resistance | [116] |
| LINC00857 | TCGA and MiTranscriptome datasets; BC cell lines | ↑ | LMAN1-associated regulation | Associated with chemoresistance and poor prognosis | [117] |
| MALAT1 | BC tissues; BC cell lines | ↑ | miR-101-3p/VEGF-C signalling axis |
Promotes cisplatin resistance | [92,119] |
| NEAT1 | Cisplatin-sensitive/ resistant BC cells | ↑ | Wnt/β-catenin signalling pathway |
Contributes to chemoresistance | [120] |
| TUG1 | BC tissues; irradiated cells; xenograft model | ↑ | HMGB1-mediated regulation | Induces radioresistance | [123] |
| MAFG-AS1 | Extracellular vesicles (EVs); BC tissues; pembrolizumab-treated patients | ↑ | Immune/ tumour microenvironment-associated regulation | predicts poor response to immunotherapy | [131] |
| FGFR-AS1 | BC tissues; BC cell lines | ↑ | FGFR3-associated regulation | Promotes proliferation, migration, and tumour progression | [132] |
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