Materials and Methods
SAFER-Study
The “Study of safety, effectiveness and immunogenicity duration after vaccination against the new SARS-Cov-2 in patients with immune mediated inflammatory diseases (SAFER-Study)” is a Brazilian national, multicenter, observational, longitudinal real-world cohort of consecutive patients with IMRD or IMID who have been vaccinated for SARS-CoV-2 evaluating the safety, effectiveness and immunogenicity of SARS-CoV-2 vaccines in this population. The inclusion period was held from June/2021 to March/2024. Follow-up is still ongoing. The present study presents data on the occurrence of breakthrough COVID-19 among patients participating of the SAFER-Study. Data from June/2021 to February/2023 were included.
SAFER-Study has included pediatric or adult patients, with a prior diagnosis of IMID or IMRD. IMRD diagnosis, according to the American College of Rheumatology (ACR) or European League against Rheumatism (EULAR) classification criteria, were rheumatoid arthritis, juvenile idiopathic arthritis, spondylarthritis and other inflammatory joint diseases, and systemic lupus erythematosus, Sjögren’s disease, inflammatory myopathies, systemic vasculitis, systemic sclerosis, mixed connective tissue, disease and other connective tissue diseases or other rheumatic diseases. IMID patients participating in SAFER-Study were those diagnosed with inflammatory bowel disease (IBD) or psoriasis. All patients gave written informed consent. SAFER-Study is a non-probability sampling study with enrollment of consecutive patients who met the selection criteria.
All patients included in this study received one to four doses of a SARS-CoV-2 vaccine. The vaccines available in Brazil during the data assessment for breakthrough COVID-19 infection were the CoronaVac vaccine (Sinovac Biotech), the AstraZeneca vaccine (ChAdOx1), and the vaccines developed by Pfizer (BNT162b2) and Janssen (Ad26.COV2.S). SAFER-study patients will be followed-up from the inclusion until December of 2024.
Baseline evaluation took place before the first dose of SARS-CoV-2 vaccine application. Follow-up visits occurred 4-weeks after each vaccine dose and, later, every 3 months until 12 months of complete follow-up.
Sociodemographic data, the presence of comorbidities, characteristics and severity of IMRD or IMID, treatments received, and clinical characteristics and outcomes of SARS-CoV-2 infection were recorded (previous or acquired during the study).
In addition, the date and place of vaccination, type of vaccine applied, scheme, and indication were registered. Blood samples were collected for immunogenicity analysis. Adverse events, disease flares, and new immune-mediated manifestations related to the vaccines were registered.
Breakthrough COVID-19
Breakthrough infection among fully vaccinated individuals was defined according to the US Centers for Disease Control and Prevention (CDC) as infection occurring ≥14 days after the second dose in a two-dose series or ≥14 days after a single-dose vaccine [
8].
COVID-19 diagnosis
COVID-19 was confirmed by a positive reverse transcriptase-polymerase chain reaction (RT-PCR) or antigen (Ag) test for SARS-CoV-2 virus from nasopharyngeal or oropharyngeal swab.
Outcomes
The primary outcomes of this study were the clinical presentation of breakthrough COVID-19. The secondary outcomes were COVID-19-related severe outcomes (need of supplemental oxygen or ventilatory assistance, hospitalization, infectious complications, and death).
Inclusion and exclusion criteria
Adult patients, fully vaccinated against SARS-Cov-2, with the diagnosis of an IMRD, developing COVID-19 confirmed by RT-PCR or Antigen-COVID-19 test were included. Patients reporting COVID-19 before the inclusion in SAFER-Study or when partially vaccinated (after the first dose or 14 days after the second dose in a two-dose series, or of a single-dose vaccine), those with the diagnosis of IBD or psoriasis (IMID), and patients not presenting COVID-18 were excluded. Patients presenting chronic infections (e.g. HIV infection, chronic viral B or C-hepatitis) or neoplasms as comorbidities were also excluded.
Study variables
Demographic variables including age, sex and self-declared color were registered.
The presence and the number of comorbidities (cardiomyopathy, diabetes mellitus, pulmonary disease, chronic kidney disease, systemic arterial hypertension, obesity) was recorded. IMRD diagnosis, treatment and activity at the time of SARS-CoV-2 vaccination and infection were recorded.
Immune-mediated inflammatory diseases differ regarding the DMARDs approved for their treatment. To minimize the impact of this heterogeneity on the associations of interest, diagnostic categories were defined according to what was done by COVID-19 Global Rheumatology Alliance (C19-GRA): inflammatory joint diseases (IJDs), connective tissue diseases (CTDs)/vasculitis, and other rheumatic diseases. In addition, treatments were categorized as follows: glucocorticoids, conventional DMARDs (cDMARDs; antimalarials, leflunomide, methotrexate, sulfasalazine), immunosuppressants (IS): (azathioprine, cyclophosphamide, cyclosporine, mycophenolate mofetil/mycophenolic acid, tacrolimus), tumor necrosis factor (TNF) inhibitors, rituximab, biologic DMARDs (bDMARDs; abatacept, belimumab, interleukin 1 [IL-1], IL-6, IL-12/23, IL-17, and IL-23 inhibitors), targeted synthetic DMARDs (tsDMARDs; Janus kinase inhibitors [JAKi)] [
9].
IMRD activity was stratified into categories based on the treating physician criteria, and grouped as remission/low or moderate/high disease activity.
Regarding SARS-CoV-2 vaccination, date, and vaccine type (CoronaVac vaccine (Sinovac Biotech), the AstraZeneca vaccine (ChAdOx1), and the vaccines developed by Pfizer (BNT162b2) and Janssen (Ad26.COV2.S) were recorded. The completion of the initial two-dose or single dose regimen and the receiving of one to two booster doses were registered.
Breakthrough COVID-19 clinical presentation (asymptomatic, cough, dyspnea, sore throat, fever, dysgeusia, hyposmia, myalgia, malaise, headache, rhinorrhea), date of diagnosis, confirmatory test performed and outcomes of interest (hospitalization, death) were recorded.
Data management and monitoring
All variables were collected face-to-face, virtual, or by telephone and the review of medical records, according to availability. The data was entered into the Research Electronic Data Capture Platform (Redcap,
https://redcap.reumatologia.org.br/). Datasets of this study are not deposited in a publicly available database study. Data will be available upon reasonable request.
Ethical considerations
The study protocol and its corresponding informed consent form were approved by the coordinator center ethics committee (CAAE: 43479221.0.1001.5505) and the independent ethics committee of all participating centers. All patients signed the informed consent before data collection.
This study was conducted in accordance with Good Clinical Practice (GCP) guidelines, the International Conference on Harmonization (ICH), the ethical principles established in the Declaration of Helsinki, the law 3301/09, and the guidelines of the local ethics committee.
Personal identification data was kept anonymous and protected according to international and national regulations to guarantee confidentiality, in accordance with the Law on Protection of Personal Data.
For the purposes of this project, only medical researchers had access to patients’ medical records to obtain the data required for the investigation, thus ensuring their confidentiality.
Statistical analysis
Descriptive analysis of sociodemographic and clinical data was carried out. Continuous variables are expressed as mean and standard deviation when the distribution was considered normal, or as median and interquartile range otherwise. Categorical variables are presented as frequencies and percentages.
Comparative analysis of patients requiring hospitalization due to COVID-19 versus those not requiring hospitalization was performed applying T-Student or Mann-Whitney tests for continuous variables, according to a normal or non-normal distribution. Categorial variables were compared using the Chi-square or Fisher’s exact test, as appropriate.
A binary logistic multiple regression, applying a backward stepwise selection was performed to evaluate the variables associated with breakthrough COVID-19-related hospitalization. Variables presenting a p-value ≤ 0.2 were included in the initial model and excluded until only significant variables persisted in the final model. A p < 0.05 was considered significant. Statistical analyses and model development were performed with
R version 4.3.1 (R Core Team, 2023), with the software RStudio version 2023.6 (Posit Team, 2023), along with the packages “tidyverse” (Wickham et al., 2019) and “gtsummary” (Sjoberg et al., 2021).
Author Contributions
Conceptualization, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; methodology, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; software, DCC, VV, GAF, KLLLM, PDCR, SLER, NSS, RPVR, AKGM, VAC, ASRV, AMK, ATL, APNB, FMMMCP, CMPFT, RCES, KLB, YGPO, VOM , RLL, EB, PZL, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; methodology, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP.; validation, DCC, VV, GAF, KLLLM, PDCR, SLER, NSS, RPVR, AKGM, VAC, ASRV, AMK, ATL, APNB, FMMMCP, CMPFT, RCES, KLB, YGPO, VOM , RLL, EB, PZL, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; methodology, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP.; formal analysis, DCC, investigation, DCC, VV, GAF, KLLLM, PDCR, SLER, NSS, RPVR, AKGM, VAC, ASRV, AMK, ATL, APNB, FMMMCP, CMPFT, RCES, KLB, YGPO, VOM , RLL, EB, PZL, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; methodology, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; resources, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP.; data curation, DCC, VV, GAF, KLLLM, PDCR, SLER, NSS, RPVR, AKGM, VAC, ASRV, AMK, ATL, APNB, FMMMCP, CMPFT, RCES, KLB, YGPO, VOM , RLL, EB, PZL, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; methodology, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; writing—original draft preparation, DCC, VV, GAF, GSP; writing—review and editing, DCC, VV, GAF, GSP.; visualization, DCC, VV, GAF, KLLLM, PDCR, SLER, NSS, RPVR, AKGM, VAC, ASRV, AMK, ATL, APNB, FMMMCP, CMPFT, RCES, KLB, YGPO, VOM , RLL, EB, PZL, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; methodology, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; supervision, DCC, VV, GAF, KLLLM, PDCR, SLER, NSS, RPVR, AKGM, VAC, ASRV, AMK, ATL, APNB, FMMMCP, CMPFT, RCES, KLB, YGPO, VOM , RLL, EB, PZL, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; methodology, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; project administration, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; methodology, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; funding acquisition, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP; methodology, DCC, VV, GAF, ATC, ETR-N, EIS, MMP, OAM, RMX, VAS, GSP. All authors have read and agreed to the published version of the manuscript.
Acknowledgments
To the participating centers: Universidade Federal Fluminense (UFF), Universidade Federal do Espírito Santo (UFES), Universidade Federal de Minas Gerais (UFMG), Universidade Federal da Paraíba (UFPB), Universidade Federal de São Paulo (UNIFESP), Universidade Federal de Juiz de Fora (UFJF), Universidade federal de Goiás (UFG), Universidade Federal do Rio Grande do Sul (UFRGS), Hospital universitário da Universidade Federal do Amazonas (UFAM); Hospital Geral da universidade Federal do Ceará (UFCE), Centro EDUMED de pesquisa de Curitiba em conjunto com Universidade Federal do Paraná (UFPR), Serviços Especializados em Reumatologia da Bahia (SER) e centros de referência em Gastroenterologia com pesquisadores cadastrados do GEDIIB. Para o seguimento do estudo no acompanhamento da etapa de vacinação bivalente no país, o estudo contará com a participação dos centros das Universidade Federal do Espírito Santo (UFES), Universidade Federal de São Paulo (UNIFESP), Universidade federal de Goiás (UFG), Universidade Federal do Rio Grande do Sul (UFRGS), Hospital universitário da Universidade federal do Amazonas (UFAM) e Hospital Geral da Universidade Federal do Ceará (UFCE). To the collaborating researchers integrating the Safer-Study task force: Adah Sophia Rodrigues Vieira, Adriana Maria kakehasi, Adriana Ribas Andrade, Alexandre Wagner Silva de Souza, Aline Teixeira de Landa, Ana Karla Guedes de Melo, Ana Luisa Souza Pedreira, Ana Paula Neves Burian, André Gustavo Cunha Trolese, Andréa Teixeira-Carvalho, Andrese Aline Gasparin, Andrieli Caroline Mehl, Anna Carolina Faria Moreira Gomes Tavares, Anna Carolina Simões Moulin, Antonio Luiz Boechat, Artur José Azevedo Pereira, Bárbara Oliveira Souza, Barbara Polli, Camila da Silva Cendon Duran, Camila Maria Paiva França Telles, Carolina Strauss Estevez Gadelha, Catherine Pancotto, Charlles Heldan de Moura Castro, Clara Lyra de Andrade Stefanon, Clarissa Ruas Yasuda, Cristiane Kayser, Cyrla Zaltman, Danielle Cristina Filgueira Alves Batista, Débora Cerqueira Calderaro, Débora Marques Veghini, Edgard Torres dos Reis-Neto, Eduardo Yasuda, Emilia Inoue Sato, Erica Vieira Serrano, Erika Biegelmeyer, Fernanda Dazilio dos Reis, Filipe Faé, Flávia Maria Matos Melo Campos Peixoto, Flavia Zon Pretti, Gabriel Smith Sobral Vieira, Gabriela Guimarães Nogueira, Gecilmara Salviato Pileggi, Gilda Aparecida Ferreira, Guilherme Leví Tres, Heitor Filipe Surlo, Helena da Silva Corona, Isabella Vargas de Souza Lima, Isac Ribeiro Moulaz, João Gabriel Leão Sperancini Amaral, João Pedro Sarcinelli Chagas, Jônatas Almeida Amorim, Jonathan Willian Da Silva Rodrigues, José Geraldo Mill, Jozelia Rêgo, Julia Fagundes Fracasso, Juliana Bühring, Juliana Ribeiro de Oliveira, karina Rosemarie Lallemand Tapia, Katia Lino Baptista, Ketty Lysie Libardi Lira Machado, Kimberly Rossana da Silva Gonçalves, Laís Pizzol Pasti, Laissa Fiorotti Albertino, Laiza Hombre Dias, Laura Gonçalves Rodrigues Aguiar, Leonardo Barbosa da Silva, Leonardo Rodrigues Campos, Lucélia Paula Cabral Schmidt, Ludmila Arrebola Rubin de Celis Mori, Luigi Marangão Calil, Luiza Helena Coutinho Ribeiro, Luiza Lorenzoni Grillo, Lunara Baptista Ferreira, Maisa Brito Nunes, Marcelo de Medeiros Pinheiro, Marcos Mavignier Sousa Dias, Maressa Barbosa Beloni Lirio, Maria Cecília Dias Corrêa, Maria da Penha Gomes Gouvea, Mariana de Oliveira Macabú, Mariana Freitas de Aguiar, Marina Deorce de Lima, Mittermayer Barreto Santiago, Nadja Maria Santiago de Mattos, Natália Rodrigues Querido Fortes, Natália Sarzi Sartori, Natália Seixas de Melo, Nicole Pamplona Bueno de Andrade, Nilzio Antonio da Silva, Odirlei André Monticielo, Olindo Assis Martins-Filho, Paula dos Santos Athayde, Pedro Matos, Pietra Zava Lorencini, Pollyana Vitoria Thomaz da Costa, Priscila Dias Cardoso Ribeiro, Rafaela Cavalheiro do Espírito Santo, Ranielly Corrêa Lube Santos Brum, Raquel Lima de Lima, Rebeca Silva Moreira da Fraga, Regiane Lima, Rejane Maria Rodrigues de Abreu Vieira, Renata Henriques de Azevedo, Ricardo Machado Xavier, Roberta Beatriz Nazareth Alagia, Rodrigo Cutrim Gaudio, Rodrigo Poubel Vieira de Rezende, Rosely Holanda da Silva Sanches, Russian Teixeira Rebello, Sabrina de Souza Ramos, Samira Tatiyama Miyamoto, Sandra Lúcia Euzébio Ribeiro, Tâmara Santos Melo, Thaís Evelyn Karnopp, Thaisa de Moraes Ribeiro Espirito Santo, Valderilio Feijó Azevedo, Valéria Bezerra da Silva, Valeria Valim, Vanessa de Oliveira Magalhães, Vanessa Hax, Vanessa Peruhype-Magalhães, Victória Dornelas Paz Carvalho, Vinícius de Pádua Sanders Medeiros, Vitor Alves Cruz, Viviane Angelina de Souza, Yasmin Gurtler Pinheiro de Oliveira.