2.2.1. Block A synthesis
The
block A synthesis sequence was adapted from Gaetano et al. [
37].
(i) 2-deoxy-3,4-O-(1-methylethylidene)-D-erythro-pentopyranose (1)
To a solution of 2-desoxy-D-ribose (18.7 mmol, 2.5 g) in anhydrous DMF (25 mL) under an argon atmosphere was added dierite dessicant (1.0 g), dimethoxy-propane (37 mmol, 3.8 g, 4.5 mL) and p-TSA (0.55 mmol, 0.1 g). The solution was stirred 3 h at room temperature. Triethylamine (TEA) (0.1 mL) was then added before to be filtered over celite pad. The filtrate was evaporated under pressure. The crude compound was purified by flash chromatography with EtOAc/Hexanes (7:3 + 1% TEA) to give 1.7 g (53 %) of compound 1. 1H NMR spectra was in full agreement with literature data.
(ii) (Methoxycarbonyl propyl)triphenylphosphonium bromide (2)
To a solution of methyl-4-bromo-butanoate (25.0 g, 140 mmol) in toluene (250 mL) was added triphenylphosphine (33.5 g, 170 mmol) and stirred at 100°C for 24 h. The resulting solid was then filtered and washed with cold toluene to give compound 2 as a white solid (12.0 g, 20%).
(iii) Methyl (4Z)-6-[(4S,5R)-5-(hydroxymethyl)-2,2-dimethyl-1,3-dioxolan-4-yl]hex-4-enoate (3)
To a solution of phosphonium salt 2 (9.6 g, 21 mmol) in anhydrous THF (60 mL) at -78 °C under an argon atmosphere was dropwise added KHMDS (1.0 M in THF, 20 mmol, 20.0 mL) over 10 min. The solution was then allowed to return at 0°C and was stirred for 1 h. To the later solution cooled down at -78°C was added compound 1 (1.5 g, 8.7 mmol) and stirred 20 min at this temperature before to be warmed at room temperature and stirred for an additional 30 min. The resulting solution was poured into a saturated ammonium chloride solution and extracted with EtOAc. The organic layer was washed with brine, dried over sodium sulfate, filtered, and evaporated under reduced pressure. The resulting crude compound was purified by flash chromatography with EtOAc/Hexanes (1:1 + 1% TEA) to give 0.67 g (32%) of compound 3. 1H NMR spectra was in full agreement with literature data.
(iv) Methyl (4Z)-6-[(4S,5S)-5-formyl-2,2-dimethyl-1,3-dioxolan-4-yl]hex-4-enoate (4)
To a solution of compound 3 (2.8 mmol, 0.67 g) in dichloromethane (DCM) (10 mL) was dropwise added a solution of Dess-Martin periodinane (5.6 mol, 2.4 g) in 10 mL of DCM. The solution was stirred for 2 h and then poured into a saturated solution of sodium bisulfite. The solution was then extracted with EtOAc. The organic layer was washed with a saturated solution of sodium bicarbonate, and then with brine, dried with sodium sulfate, filtered and evaporated under reduce pressure. The resulting crude product 4 was used as such toward next step. 1H NMR spectra was in full agreement with literature data.
(v) methyl (4Z)-6-[(4S,5R)-5-ethynyl-2,2-dimethyl-1,3-dioxolan-4-yl]hex-4-enoate (5)
To K2CO3 (7.9 mmol, 1.1 g) under an argon atmosphere was dropwise added a solution of phosphonate (3.9 mmol, 0.67 g) in MeOH (10 mL). To the later solution was dropwise added a solution of aldehyde 4 (2.8 mmol, 0.67 g) in MeOH (45 mL) at room temperature and the solution was stirred for 3 h at room temperature. The resulting solution was poured into water, extracted with EtOAc, washed with brine, dried over sodium sulfate, filtered and evaporated under reduce pressure. The crude compound was purified by flash chromatography with EtOAc/hexanes (3:7 + 1% TEA) to give 330 mg (50%) of compound 5. 1H NMR (400 MHz, Acetone- d6) 5.57 – 5.36 (m, 2H), 4.77 (dd, J = 5.5, 2.2 Hz, 1H), 4.10 (ddd, J = 7.2, 6.5, 5.5 Hz, 1H), 3.59 (s, 3H), 3.05 (d, J = 2.2 Hz, 1H), 2.56 – 2.42 (m, 2H), 2.42 – 2.26 (m, 2H), 1.43 (s, 3H), 1.26 (s, 3H).13C NMR (100.6 MHz, Acetone-d6) 172.7, 130.1, 125.8, 110.0, 109.3, 77.4, 76.3, 68.8, 50.7, 33.3, 29.4, 27.2, 25.6, 22.8 ppm. LRMS (APCI pos) m/z 253.1 [M + H].
(vi) Methyl (4Z)-6-{(4S,5R)-2,2-dimethyl-5-[(E)-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)ethenyl]-1,3-dioxolan-4-yl}hex-4-enoate (Block-A)
In a microwave vial under an argon atmosphere was added compound 5 (1.3 mmol, 330 mg), TEA (0.4 mmol, 0.04 mL) and pinacolborane (2.5 mmol, 0.38 mL). At this mixture was added the Schwartz reagent (0.13 mmol, 34 mg) and the solution was heated at 60°C for 36 h. The resulting solution was poured into water, extracted with EtOAc, washed with brine, dried over sodium sulfate, filtered and evaporated under reduce pressure. The crude compound was purified by flash chromatography with EtOAc/hexanes (2:8 + 1% TEA) to give 105 mg (21%) of compound Block-A. 1H NMR (400 MHz, Acetone- d6) ) δ 6.60 – 6.39 (m, 1H), 5.64 (dd, J = 18.0, 1.4 Hz, 1H), 5.44 – 5.33 (m, 2H), 4.58 (td, J = 6.4, 1.4 Hz, 1H), 4.23 (dt, J = 7.7, 6.3 Hz, 1H), 3.58 (s, 3H), 2.41 – 2.24 (m, 4H), 2.18 (td, J = 7.4, 6.7, 4.5 Hz, 2H), 1.41 (d, J = 0.7 Hz, 3H), 1.28 (d, J = 0.7 Hz, 3H), 1.22 (s, 12H).13C NMR (100.6 MHz, Acetone-d6) 172.6, 148.8, 129.6, 126.5, 108.0, 83.0, 79.8, 77.9, 50.7, 33.3, 27.5, 24.8, 24.2, 22.9 ppm. LRMS (APCI pos) m/z 381.2 [M + H].
2.2.3. RvD1 analogues 1 and 2 syntheses
(i) 1-(4-bromo-1,2-dimethyl-1H-imidazol-5-yl)hexan-1-one (6)
This compound was prepared following a literature procedure [
37] (
Figure 3).
1H NMR data were in full agreement with that reported in the literature.
Figure 3.
Chemical synthesis of RvD1 analogues 1 and 2. Reagents, conditions and reaction yields.
Figure 3.
Chemical synthesis of RvD1 analogues 1 and 2. Reagents, conditions and reaction yields.
(ii) Methyl (4Z)-6-{(4S,5R)-5-[(E)-2-(5-hexanoyl-1,2-dimethyl-1H-imidazol-4-yl)ethenyl]-2,2-dimethyl-1,3-dioxolan-4-yl}hex-4-enoate (7)
In a 20 mL microwave vial, compound 6 (54 mg, 0.20 mmol) and Block A (100 mg, 0.26 mmol) were solubilised in DMF (1.2 mL) and 2M K2CO3 (0.2 mL). Argon was bubbled through the mixture for 15 min before addition of Pd(PPh3)4 (20 mg. 0.016 mmol). After sealing, the tube was heated in a microwave apparatus at 115oC for 1 h. After cooling at room temperature, water was added and the aqueous phase extracted with EtOAc. The combined extracts were washed with water, brine and dried over Na2SO4. The residue was purified on silica gel eluting with toluene-EtOAc-ether (90:10:10 to 70:30:10) affording compound 7 (61 mg, 70%). 1H NMR shows contamination with triphenylphosphine oxide and (1,2-dimethyl-1H-imidazol-5-yl)hexan-1-one. 1H NMR (400 MHz, Methanol-d4) δ 6.86 (d, J = 15.3 Hz, 1H), 6.43 (dd, J = 15.3, 6.8 Hz, 1H), 5.33 (m, 2H), 4.68 (m, 1H), 4.21 (q, J = 6.6 Hz, 1H), 3.65 (s, 3H), 3.49 (s, 3H), 2.29 (s, 3H), 2.18 (s, 6H), 1.58 (m, 2H), 1.41 (s, 3H), 1.26 (m, 7H), 0.81 (bs, 3H).
(iii) Methyl (4Z)-6-[(4S,5R)-5-{(E)-2-[5-(1-hydroxyhexyl)-1,2-dimethyl-1H-imidazol-4-yl]ethenyl}-2,2-dimethyl-1,3-dioxolan-4-yl]hex-4-enoate (8)
To an ice-cooled solution of compound 7 (60 mg, 0.13 mmol) in MeOH (1 mL) was added NaBH4 (10 mg, 0.26 mmol). The mixture was stirred at 5oC for 1 h then quenched with a 10% aqueous solution of NaH2PO4. The aqueous phase was extracted twice with EtOAc. The combined extracts were washed with water, brine and dried over Na2SO4. Evaporation gave quantitatively compound 8 (60 mg). 1H NMR (400 MHz, Methanol-d4) δ 6.59 (d, J = 15.6 Hz, 1H), 6.21 (dd, J = 15.6, 8.1 Hz, 1H), 5.43 (m, 2H), 4.68 (m, 1H), 4.21 (m, 1H), 3.65 (s, 3H), 3.62 (s, 3H), 2.30 (s, 3H), 2.18 (s, 3H), 1.92 (m, 1H), 1.76 (m, 1H), 1.49-1.19 (m, 6H), 0.88 (bs, 3H).
(iv) Methyl (4Z,7S,8R,9E)-7,8-dihydroxy-10-[5-(1-hydroxyhexyl)-1,2-dimethyl-1H-imidazol-4-yl]deca-4,9-dienoate (RvD1 analogue 2)
To a solution of crude compound 8 (60 mg, 0.13 mmol) in MeOH (1 mL) was added p-TSA (39 mg, 0.21 mmol) at 5oC and stirred for 4 h. Triethylamine was added and MeOH was evaporated under reduce pressure. The residue was poured into water and extracted with EtOAc. The combined extracts were washed with water, brine, dried over Na2SO4, filtered and evaporated under reduced pressure to give crude material. This later compound was purified by flash chromatography using DCM/MeOH (9:1) as eluent to give compound RvD1 analogue 2 (33 mg, 60%). 1H NMR (400 MHz, Methanol- d4) δ 6.58 (d, J = 15.7 Hz, 1H), 6.27 (dd, J = 15.1, 7.3 Hz, 1H), 5.55 (m, 2H), 5.45 (m, 1H), 4.58 (m, 1H), 4.08 (m, 1H), 3.64 (s, 3H), 3.59 (s, 3H), 2.37 (m, 3H), 1.93-1.71 (m, 2H), 1.49-1.17 (m, 6H), 0.88 (bs, 3H). 13C NMR (100.6 MHz, Methanol- d4) 174.0, 146.0, 149.9, 133.5, 130.1, 128.9, 127.4, 127.2, 126.6, 126.5, 121.6, 75.5, 75.4, 74.6, 74.5, 64.9, 50.6, 36.1, 36.0, 33.4, 33.3, 31.4, 31.3, 30.7, 30.2, 25.5, 25.4, 22.6, 22.3, 12.9, 11.2. LRMS (APCI pos) m/z 409.3 [M + H]. HPLC purity = 99.6%.
(v) (4Z,7S,8R,9E)-7,8-dihydroxy-10-[5-(1-hydroxyhexyl)-1,2-dimethyl-1H-imidazol-4-yl]deca-4,9-dienoic acid (RvD1 analogue 1)
To a solution of compound RvD1 analogue 2 (22 mg, 0.06 mmol) in MeOH (0.5 mL) was added LiOH (16 mg, 0.38 mmol). The mixture was stirred at 4oC overnight and then poured into aqueous solution (10%) of NaH2PO4. The aqueous solution was extracted with EtOAc, washed with brine, dried over sodium sulfate, filtered and evaporated under reduce pressure to give 17 mg (80%) of compound RvD1 analogue 1 as a yellow solid. 1H NMR (400 MHz, Methanol- d4) δ 6.65 (d, J = 15.7 Hz, 1H), 6.42 (dd, J = 15.1, 7.3 Hz, 1H), 5.51 (m, 2H), 4.94 (m, 1H), 4.18 (m, 1H), 3.75 (s, 3H), 3.65 (m, 1H), 2.51 (s, 3H), 2.47-2.38 (m, 2H), 2.38-2.23 (m, 4H), 1.93-1.77 (m, 2H), 1.49-1.19 (m, 6H), 0.90 (bs, 3H). 13C NMR (100.6 MHz, Methanol- d4) 177.2, 145.6, 145.5, 130.9, 130.8, 130.2, 130.1, 129.9, 129.3, 126.4, 126.1, 117.5, 117.4, 74.43, 74.41, 74.4, 74.3, 64.7, 64.6, 35.96, 35.9, 34.8, 31.33, 31.32, 31.3, 30.4, 30.3, 29.3, 25.34, 25.33, 23.3, 22.2, 12.9, 10.1, 10.0. LRMS (APCI pos) m/z 395.3 [M + H]. HPLC purity = 100.0%.
All results of analogues synthesis, including
1H NMR spectrum,
13C NMR spectrum, LCMS chromatogram, and mass spectrum, were described in
Figures S1-9.