Introduction
Coronavirus disease 2019 (COVID-19) is an infectious disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which was first identified in 2019 in Wuhan, China [
1]. The outbreak of COVID-19 began with "pneumonia of unknown cause" in Wuhan City, Hubei Province in December 2019, followed by the international spread of the disease, mainly in China. The World Health Organization (WHO) declared a Public Health Emergency of International Concern (PHEIC) on January 30, 2020, and as of March 18, 2021, WHO reported 120,383,919 cases and 2,664,386 deaths worldwide, with 223 countries/regions with confirmed cases. Multiple coronavirus variants (alpha, beta, gamma, delta, and omicron) have been discovered to date, and they have spread globally (WHO).
It remained difficult to control SARS-CoV-2 transmission during pandemic waves because of the large number of people with asymptomatic infection, who have similar viral loads as symptomatic patients, as well as viral shedding in symptomatic patients before symptom onset. In Japan, seven SARS-CoV-2 epidemic waves were encountered through the middle of 2022. Each wave consisted of a sharp surge and subsequent decline in new infection cases. Some reports described the acquisition of humoral immune responses after recovery from SARS-CoV-2 infection in Japanese patients [
2,
3]; D614G mutation-carrying variants were the primary causes of COVID-19 [
4].
Many important reports on the relationship between antibody production and patient background has been accumulated. In general, neutralizing antibody activities in patients with COVID-19 vary widely from patient to patient, peak neutralizing antibody activities, however, are known to increase in proportion to the severity of the disease [
5]. However, the well-balanced and coordinated function of antibody-producing B cells, T cells is important for biological defense during acute infection with novel coronaviruses [
6], and the importance of natural immune system has been pointed out, which contributes to an asymptomatically recovery despite the low production of antibodies [
7]. Thus, a complex network of collaboration and communication among cells function to elimination virus should be considered, however, the information regarding antibody levels and activity analyzed by patient background and the decay of neutralizing activity still remains insufficient.
To manage the inoculation strategy for the available coronavirus vaccines, it is considered important for Japanese medical personnel to know the naturally acquired post–SARS-CoV-2 infection immunity status of patients and compare it with coronavirus vaccine-derived immunity. In this study, we evaluated the anti-spike and neutralizing antibody levels of patients infected with SARS-CoV-2 between January 2021 and September 2021. During this period, the alpha, delta, and D614G mutation-carrying variants were the primary causes of COVID-19 [
4]. The objective of this study is to obtain the information for the development of new prophylactic vaccines and new treatments against COVID-19 in Japan.
Materials and Methods
Study Samples
Inclusion Criteria
Serum samples from non-hospitalized individuals or hospitalized individuals who had recuperated from previous SARS-CoV-2 infection, satisfying all of the following inclusion criteria, was selected in this observational study.
(1) Samples from study subjects from whom written voluntary informed consent to participate in this study has been obtained.
(2) Samples from study subjects who have given consent for the principal investigator, etc. to collect information on the diagnosis, treatment, etc. from the medical institution, health center, etc. where the SARS-CoV-2 infection was diagnosed/treated.
(3) Samples from study subjects aged 20 years or older at the time of informed consent.
(4) Samples from study subjects who have recuperated from infection after testing positive for SARS-CoV-2 diagnosed through nucleic acid detection or antigen testing and who tested negative in nucleic acid detection or antigen tests, or archival samples from individuals who have recuperated and are similar to those mentioned above.
(5) Samples from 20 to 180 days after testing positive for SARS-CoV-2.
Exclusion Criteria
Samples were excluded from the analysis if met any of the following criteria:
(1) Samples from individuals who have not recuperated from SARS-CoV-2 infection.
(2) Samples from recipients of prophylactic COVID-19 vaccines (including products in development).
(3) Samples for which there has been a request to withdraw consent.
(4) Samples considered ineligible by the principal investigator or sub-investigator.
Study Procedure
The SARS-CoV-2 infection was confirmed by nucleic acid detection or antigen testing. Samples from study subjects who recuperated from infection or archival samples from individuals who recuperated were transported to a testing facility in order to measure neutralizing activity against the pseudovirus of SARS-CoV-2 and SARS-CoV-2 spike (S) glycoprotein-specific antibody titers. For a sample collected from a study subject, a nucleic acid detection test or antigen test was performed again to confirm the SARS-CoV-2 infection status at the time of sample collection. If negative results are obtained, data was included in the analysis set of this study, and if positive results are obtained, data was excluded from the analysis set. Even if archival samples are used, data from samples with negative results was included in the analysis set.
The following information was entered into the case report form for each study subject: anonymized study ID, age, sex, onset date, date of definitive diagnosis, definitive diagnosis result (nucleic acid detection or antigen test), non-hospitalization/hospitalization, severity of SARS-CoV-2 infection, result of assessment of recuperation from infection (nucleic acid detection or antigen test), date of sample collection. The severity was classified into five levels as follows; asymptomatic, mild (no respiratory symptoms or cough only without dyspnea, SpO2 ≥ 96%, no evidence of pneumonia in any case), moderate I (no respiratory failure, pneumonia findings, or dyspnea, 93% < SpO2 < 96%), moderate II (respiratory failure requiring supplemental oxygen, SpO2 ≤ 93%), and severe (admitted to intensive care unit) or requiring a ventilator).
In this study, personal information was managed using an enrollment number unique to each study subject assigned for anonymization. A correspondence table of enrollment numbers was appropriately managed by the department in charge at the study institution providing biological samples. In addition, materials and correspondence tables containing other personal information collected in this study was managed appropriately in compliance with the management methods specified at the institution providing biological samples to protect personal information. If sharing study results with institutions providing biological samples, data was handled only with the anonymized study ID assigned for this study. The information to be provided to the collaborative research institution only was the anonymized study ID, measurement data, and information without personal identification and information that can identify a particular individual was not provided in order not to keep no possibility of risk or disadvantage associated with the leakage of information of study subjects.
Sample Analyses
SARS-CoV-2 anti-spike IgG concentrations were measured at Nexelis (Laval, Canada) using S-ELISA, and neutralizing activity (50% inhibitory dilution: ID50) was determined using PhenoSense SARS-CoV-2 neutralizing antibody assay (PNA) at Labcorp (Indianapolis, IN, USA). The analytical methods of S-ELISA and PNA were validated by Nexelis and Labcorp, respectively.
The SARS-CoV-2 Pre-Spike recombinant antigen is adsorbed onto the 96-well microplate. Following incubation, the microplate is washed to remove unbound SARS-CoV-2 Pre-Spike recombinant antigen and blocked to prevent non-specific binding. Standard, controls and sample dilutions are incubated in the coated microplate in which anti-SARS-CoV-2 Pre-Spike lgG specific antibodies (primary antibodies) bind to the coated antigen. Following incubation, the microplate is washed to remove unbound primary antibodies. Primary antibodies are detected with the addition of the anti-human lgG antibody (secondary antibody) conjugated to peroxidase. After incubation, the microplate is washed to remove unbound secondary antibodies. The peroxidase substrate solution, tetramethylbenzidine (TMB), is added to the microplate and a colored product is developed which is proportional to the amount of anti-SARS-CoV-2 Pre-Spike lgG antibodies present in the serum sample. 2N H2SO4 is then added to stop the colorimetric reaction. The absorbance of each well is measured using a microplate spectrophotometer reader at a specific wavelength (450/620 nm). Antibody concentrations are calculated for each control and sample dilution by interpolation of the OD values on the 4-parameter logistic (4-PL) standard curve and adjusted according to their corresponding dilution factor. The final concentration of controls and samples were then determined by calculating the geometric mean of all adjusted concentrations (for the given control or sample) obtained within the interpolation range of the standard curve. The mean absolute percentage of the relative error calculated from all standard points had to be 15.0% or less. Samples and controls concentrations are expressed as ELISA Laboratory Unit per milliliter (ELU/mL).
The measurement of neutralizing activity using PNA was performed by generating HIV-1 pseudovirions that express the SARS CoV-2 spike protein. The reporter pseudovirus is prepared by co-transfecting HEK293 producer cells with an HIV-1 genomic vector and a SARS CoV-2 envelope expression vector. Neutralizing antibody activity is measured by assessing the inhibition of luciferase activity in HEK293 target cells transiently expressing the ACE2 receptor following pre-incubation of the pseudovirions with the serum specimen. A serial dilution of test serum specimen is incubated with a reporter pseudovirus to generate an inhibition curve that enables the determination of an ID50 for each sample. Luminescence as an index of capability of inhibiting the virus from replicating and thereby prevent the luciferase by samples was measured as relative luminescent unit (RLU). Acceptable limit of intra-assay and inter-assay precision was set <30% ID50 CV.
Detection limit for ELISA titer (EUL/ml) and neutralizing activity (ID50) was 50 and 40, respectively. Accordingly, a value of 25 (half the minimum required dilution) for ELISA and a value of 20 (half the minimum required dilution) for PNA were assigned to samples below the cutoff point.
Statistical Analyses
Frequency table number of specimens, percentage were calculated from the categorical data. Continuous variables were expressed as the mean, median, minimum/maximum, and interquartile range. Antibody titers and neutralizing activity were stratified by age, sex, and disease severity. The geometric mean and 95% confidence interval were calculated for both S-ELISA and PNA data from eligible participants. Data analysis was performed by EPS Corporation (Tokyo, Japan), by using SAS® 9.4 (SAS Institute Inc., Cary, NC, USA.)
Sample Size
In a similar study overseas [
8], the correlation between the severity of COVID-19 and neutralizing antibody activities is being evaluated using 32 samples from non-hospitalized individuals and 40 samples from hospitalized individuals. In this study, the sample size of at least 50 samples from non-hospitalized individuals and at least 50 samples from hospitalized individuals were set based on the number of individuals who have recuperated from previous SARS-CoV-2 infection that could be accrued by December 31, 2021, the end date of the study period, using this overseas study report as a reference.
Discussion
In this cross-sectional study, we quantified anti-spike and neutralizing antibody levels in patients who contracted COVID-19 between January and September 2021. Accordingly, it is assumed that the dominant strains were the D614G variant from January to March, the alpha strain from April to June, and the delta strain from July to September [
4]. In total, 96.5% (141 of 146) of patients with mild respiratory symptoms or high oxygen saturation did not require hospitalization, whereas 97% (38 of 39) of patients with moderate dyspnea or pneumonia required hospitalization, suggesting that medical care was provided appropriately during the pandemic in Japan.
It has been reported that male sex, older age, and hospitalization are associated with the anti-spike IgG response [
9,
10]. In the analysis stratified by age, antibody titers in our study were lower in patients aged 60 years and older, and antibody levels did not differ between hospitalized and non-hospitalized patients in this age group, illustrating that antibodies were not produced according to disease severity and suggesting that the insufficient immune response to new pathogens in older patients. Apart from this, age was identified as a negative independent variable for serum anti–SAR-CoV-2S antibody levels after immunization with mRNA-based COVID-19 vaccines based on data from more than 2000 people [
11]. Anti-spike antibody titers and neutralizing activity did not differ according to sex in this study. This result was consistent with those reported by Trinite et al. [
8], who found that the plateau of neutralizing activity was similar between men and women even though the maximum titer of neutralizing antibodies significantly differed. It is likely that there is not apparent gender difference in respect of antibody production [
9,
10]. However, Scully et al. is reporting that males are associated with a greater risk of more severe COVID-19 outcomes [
12].
In this study, when patients with COVID-19 were classified by disease severity, antibody titers and neutralizing activity were low in asymptomatic and mildly ill patients, whereas they were high in patients with moderate disease severity. These results were consistent with those reports showing that the severely ill patients with COVID-19 have the higher anti-spike antibody levels, and the production of more potent neutralizing antibodies [
8,
13]. However, it is noteworthy that Trinité et. al., reported no correlation between neutralizing capacity and length of hospitalization, indicating the possibility that the presence of neutralizing antibodies is not a determinant for the disease resolution, i.e., a contradictory situation in which neutralizing activities are not associated with clinical benefit [
8]. Furthermore, it is suggested that while antibody production plays an important role in the elimination of the SARS-CoV-2 virus, the well-balanced function of both CD4+ T cells essential for antibody production and memory B cell formation, and CD8+ T cells providing protection against antigens, is more important for preventing aggravation [
6]
Our analysis illustrated that some patients have neutralizing activity of less than 1.6 log ID
50 despite moderate antibody levels, suggestive of the production of non-neutralizing antibody as well as a risk of reinfection. The neutralizing activity of each IgG fraction and the amount of SARS-CoV-2–binding antibody in serum/plasma obtained at multiple time points were determined in 43 patients [
14], and 16 patients with considerable antibody titers had no neutralizing activity during the observation periods. It is curious that the cohort with these characteristics mainly included patients with mild severity, and this finding was common to both studies. Further investigation regarding risk factors for the production of antibodies with insufficient activity is required in the future. Antibody level below the detection limit were observed in younger patients in our study. The reason why this type of patients was exclusively distributed in this group is uncertain. In general, if the innate immunity adequately and strongly functioned, in which in turn the virus could have been eliminated before production of antibody, and also functions for aggravation of infection. Moderbacher et al. proposed the important role of higher level of naïve T cells for eliminating virus in the young [
6]. In addition, the importance of robust natural immune system has been pointed out, which may contribute to an asymptomatically recovery despite the low production of antibodies in children and youth [
7,
15].
Antibody titers in patients with moderate or severe disease persist for a relatively long period (up to 180 days). Previous reports in Japan also found that COVID-19 survivors had sustained neutralizing activity for approximately 6 or 12 months after infection [
2,
3]. How long the neutralizing activity of antibodies is maintained is important information for estimating the risk of re-infection. The antibody decay was analyzed by
Khoury et al., and they extrapolated that the neutralizing activity would drop below the detection limit around 240 days after outbreak, and half-life was estimated to be approximately 90 days, of which the model assumed that the decay in neutralizing activity is the same regardless the initial starting antibody titers [
16]. The data concerning the antibody titers and neutralizing activity necessary for preventing infection are are currently limited. However, after plasma antibodies from monkeys that had recovered from SARS-CoV-2 infection were transfused to other monkeys at various concentrations before challenge with SARS-CoV-2, the antibody titers required for protection, i.e., decreasing the amount of virus in the upper respiratory tract compared to that in the control group, was estimated at approximately 50 pseudovirus neutralizing antibody activity in blood before infection [
17]. By utilizing the data from seven clinical trials for Covid-19 vaccine and one convalescent study, Khoury et al. is reporting the neutralizing activity which reduces half the chance of infection is equivalent to about 20% of the mean neutralizing activity of convalescent plasma based on a normally distributed model and about 30% by using a distribution-free approach [
16].
The samples were cross-sectional, and the window of data collection was relatively tight. The sampled population is considered to represent a clinically diverse one, and its wide age range is representative of the blood donor population in a general clinical practice. However, this study had multiple limitations. Serum samples were not obtained from patients with severe symptoms in this study, and thus, we could not fully analyze the relationship between the levels and activity of antibodies or examine the time course of antibody activity across patients with COVID-19. The data released by the Japanese government from three different districts between January and February 2022 illustrated that the rate of severe disease among infected people with no history of vaccination remains low (less than 0.5% [145/34,136 patients]) [
18]. This might partly support the plausibility of sampling bias in this analysis. In addition, this study contained fewer number of asymptomatic patients (n=8) as well as the elder patients (n=14). Furthermore, this study consisted of samples provided from the patients at a single and arbitrary point (pooled data), not from sequential sampling in each patient. In interpreting the results of this stratified analysis of antibody titers and neutralizing activities, it is important to note that time after infection, i.e., antibody decay, was not considered, therefore this could remain as a substantial bias. We could not also eliminate biases such as underlying factors, especially those affecting the immune system such as antibody production, as well as alternative confounding effects associated with the baseline characteristics used in this analysis and residual confounders.
Ethics Statement
In the case study subjects visited the study institution for samples to be collected, written consent was obtained using the specified informed consent form. In the case archival samples retained at the study institution was used, the sample provider was notified through an opt-out procedure and, if an intention to withdraw consent was expressed, the samples was not utilized. The study was conducted according to the "Helsinki Declaration of the World Medical Congress". For this study, approval was obtained from the institutional review board of the representative study institution (Sekino Hospital, Tokyo), prior to the conduct of this study, and then an application for approval was submitted to the institutional review board of each study institution (approval No. and date: 20210618-22S372 at IRB No. 14000050 on July 16, 2001 and approval No. and date: 2102 at Sekino Hospital IRB on July 16, 2001). After approval is obtained at each study institution, this study was sequentially started. The outline of this study was registered into the public database (UMIN-CTR) established by the National University Hospital Council of Japan under the number UMIN000044638, and disclosed to the public prior to the start of conduct.