The epithelium includes various highly specialized cells that play critical roles in almost all biological processes and they are considered essential to maintain tissue homeostasis in many organs. In this context, several studies have begun to examine the active role of epithelial cells in several autoimmune disorders characterized by fibrosis. The EMT program, under pathological conditions, can lead to the reduction of normal epithelial cells, destroying tissue architecture, inducing pathogenic activation of fibroblasts and driving organ failure [
8]. The knowledge of the molecular mechanisms that occur in EMT program has demonstrated that the epithelial state of the cells initially considered immutable, can undergo important changes in gene expression and post-translational regulation leading to the repression of the epithelial characteristics and to the acquisition of mesenchymal characteristics displaying fibroblast-like morphology and cytoarchitecture [
48]. Recently, considerable attention has been paid to chronic inflammatory disorders pSS in which the inflammatory status is often associated with pathological EMT-dependent salivary gland fibrosis [
49]. Emerging evidences suggest that epithelial cells are also an important source of myofibroblasts in organ fibrosis [
50] and this trans-differentiation is evaluated as a tightly specialized system of the EMT process that may be a central event in the salivary gland fibrosis [
49]. The implications of these findings were very important and the recent explosion of knowledge in the biology of cellular differentiation has highlighted, for example, that differentiated cell type, such as a tubular or acinar salivary gland epithelial cell in pSS, with a wide set of glandular characteristics such as secretion and transport, could radically change their transcriptional process, transcribing genes characteristic of mesenchymal cell type [
49,
50,
51,
52]. Supporting this opinion, recent evidence highlights that salivary gland epithelial cells derived from healthy biopsies, when exposed to TGF-β1 stimulation, acquired a more fibroblast-like morphology [
49,
53,
54]. Also, in SSc, recent studies have demonstrated anomalous phenotypes of the skin epithelium [
55]. Indeed, phenotypically altered epithelial cells possibly explain the selective organ fibrosis in the skin, oesophagus and lung that occur in SSc [
55]. In this context, several studies have begun to examine the functional role of tubular epithelial cells in the pathogenesis of lupus nephritis [
56]. Renal tubular epithelial cells actively participate in the tubulointerstitial pathology of lupus nephritis through the expression of cytokines, chemokines, and pro-fibrotic factors, and playing a crucial crosstalk with infiltrating cells of the immune system [
56,
57]. Findings suggest that anti-dsDNA antibodies that bind to the surface of renal tubular epithelial cells, but without cellular uptake and cytoplasmic/nuclear translocation, can promote tubule interstitial fibrosis and subsequently kidney dysfunction [
58]. Yung et al. reported that anti-dsDNA antibodies derived from lupus nephritis patients, induce a significant increase in the fibronectin expression in human renal tubular epithelial cells, a process dependent, in part, on the secretion of fibrogenic factors as TGF-β [
58]. These data suggest that fibrosis development in lupus nephritis is initiated and amplified via complex signalling pathways involving anti-dsDNA antibodies, fibronectin, and TGF-β in renal tubular epithelial cells [
56]. A recent study has identified a key role for IL-23 as pro-fibrotic molecule in RA-associated interstitial lung disease through the induction of EMT-dependent transformation of somatic alveolar type I epithelial cells in fibroblast like cells. The acquisition of a mesenchymal phenotype induced by IL-23 included increased deposition of ECM, the acquisition of invasiveness, and resistance to apoptosis, all events of which may contribute to the formation of fibroblastic foci in fibrotic ILD, especially in the context of autoimmune pathology such as RA [
59]. (
Figure 4).