{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,12,1]],"date-time":"2022-12-01T06:15:01Z","timestamp":1669875301860},"reference-count":18,"publisher":"MDPI AG","issue":"7","license":[{"start":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T00:00:00Z","timestamp":1624579200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Genes"],"abstract":"A signal analysis of the complete genome sequenced for coronavirus variants of concern\u2014B.1.1.7 (Alpha), B.1.135 (Beta) and P1 (Gamma)\u2014and coronavirus variants of interest\u2014B.1.429\u2013B.1.427 (Epsilon) and B.1.525 (Eta)\u2014is presented using open GISAID data. We deal with a certain new type of finite alternating sum series having independently distributed terms associated with binary (0,1) indicators for the nucleotide bases. Our method provides additional information to conventional similarity comparisons via alignment methods and Fourier Power Spectrum approaches. It leads to uncover distinctive patterns regarding the intrinsic data organization of complete genomics sequences according to its progression along the nucleotide bases position. The present new method could be useful for the bioinformatics surveillance and dynamics of coronavirus genome variants.<\/jats:p>","DOI":"10.3390\/genes12070973","type":"journal-article","created":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T15:07:40Z","timestamp":1624633660000},"page":"973","source":"Crossref","is-referenced-by-count":6,"title":["Uncovering Signals from the Coronavirus Genome"],"prefix":"10.3390","volume":"12","author":[{"given":"Enrique","family":"Canessa","sequence":"first","affiliation":[]}],"member":"1968","published-online":{"date-parts":[[2021,6,25]]},"reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(20)30251-8"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2012-7"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2008-3"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.abb9153"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2090"},{"key":"ref6","unstructured":"Milestones in Genomic Sequencingwww.nature.com\/collections\/genomic-sequencing-milestones"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1186\/1687-4153-2014-8"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2014.05.043"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1016\/0375-9601(95)00047-7"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2015.02.026"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.4236\/cmb.2016.62003"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygeno.2020.07.003"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.02582-15"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevLett.68.3805"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbadis.2020.165878"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2007.06.011"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1088\/0305-4470\/33\/19\/302"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1038\/nrd.2017.243"}],"container-title":["Genes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2073-4425\/12\/7\/973\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T15:30:48Z","timestamp":1624635048000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2073-4425\/12\/7\/973"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,6,25]]},"references-count":18,"journal-issue":{"issue":"7","published-online":{"date-parts":[[2021,7]]}},"alternative-id":["genes12070973"],"URL":"http:\/\/dx.doi.org\/10.3390\/genes12070973","relation":{},"ISSN":["2073-4425"],"issn-type":[{"value":"2073-4425","type":"electronic"}],"subject":["Genetics (clinical)","Genetics"],"published":{"date-parts":[[2021,6,25]]}}}
{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,12,1]],"date-time":"2022-12-01T06:15:01Z","timestamp":1669875301860},"reference-count":18,"publisher":"MDPI AG","issue":"7","license":[{"start":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T00:00:00Z","timestamp":1624579200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Genes"],"abstract":"A signal analysis of the complete genome sequenced for coronavirus variants of concern\u2014B.1.1.7 (Alpha), B.1.135 (Beta) and P1 (Gamma)\u2014and coronavirus variants of interest\u2014B.1.429\u2013B.1.427 (Epsilon) and B.1.525 (Eta)\u2014is presented using open GISAID data. We deal with a certain new type of finite alternating sum series having independently distributed terms associated with binary (0,1) indicators for the nucleotide bases. Our method provides additional information to conventional similarity comparisons via alignment methods and Fourier Power Spectrum approaches. It leads to uncover distinctive patterns regarding the intrinsic data organization of complete genomics sequences according to its progression along the nucleotide bases position. The present new method could be useful for the bioinformatics surveillance and dynamics of coronavirus genome variants.","DOI":"10.3390\/genes12070973","type":"journal-article","created":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T15:07:40Z","timestamp":1624633660000},"page":"973","source":"Crossref","is-referenced-by-count":6,"title":["Uncovering Signals from the Coronavirus Genome"],"prefix":"10.3390","volume":"12","author":[{"given":"Enrique","family":"Canessa","sequence":"first","affiliation":[]}],"member":"1968","published-online":{"date-parts":[[2021,6,25]]},"reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(20)30251-8"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2012-7"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2008-3"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.abb9153"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2090"},{"key":"ref6","unstructured":"Milestones in Genomic Sequencingwww.nature.com\/collections\/genomic-sequencing-milestones"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1186\/1687-4153-2014-8"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2014.05.043"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1016\/0375-9601(95)00047-7"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2015.02.026"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.4236\/cmb.2016.62003"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygeno.2020.07.003"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.02582-15"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevLett.68.3805"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbadis.2020.165878"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2007.06.011"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1088\/0305-4470\/33\/19\/302"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1038\/nrd.2017.243"}],"container-title":["Genes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2073-4425\/12\/7\/973\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T15:30:48Z","timestamp":1624635048000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2073-4425\/12\/7\/973"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,6,25]]},"references-count":18,"journal-issue":{"issue":"7","published-online":{"date-parts":[[2021,7]]}},"alternative-id":["genes12070973"],"URL":"http:\/\/dx.doi.org\/10.3390\/genes12070973","relation":{},"ISSN":["2073-4425"],"issn-type":[{"value":"2073-4425","type":"electronic"}],"subject":["Genetics (clinical)","Genetics"],"published":{"date-parts":[[2021,6,25]]}}}
{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,12,1]],"date-time":"2022-12-01T06:15:01Z","timestamp":1669875301860},"reference-count":18,"publisher":"MDPI AG","issue":"7","license":[{"start":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T00:00:00Z","timestamp":1624579200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Genes"],"abstract":"A signal analysis of the complete genome sequenced for coronavirus variants of concern\u2014B.1.1.7 (Alpha), B.1.135 (Beta) and P1 (Gamma)\u2014and coronavirus variants of interest\u2014B.1.429\u2013B.1.427 (Epsilon) and B.1.525 (Eta)\u2014is presented using open GISAID data. We deal with a certain new type of finite alternating sum series having independently distributed terms associated with binary (0,1) indicators for the nucleotide bases. Our method provides additional information to conventional similarity comparisons via alignment methods and Fourier Power Spectrum approaches. It leads to uncover distinctive patterns regarding the intrinsic data organization of complete genomics sequences according to its progression along the nucleotide bases position. The present new method could be useful for the bioinformatics surveillance and dynamics of coronavirus genome variants.<\/jats:p>","DOI":"10.3390\/genes12070973","type":"journal-article","created":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T15:07:40Z","timestamp":1624633660000},"page":"973","source":"Crossref","is-referenced-by-count":6,"title":["Uncovering Signals from the Coronavirus Genome"],"prefix":"10.3390","volume":"12","author":[{"given":"Enrique","family":"Canessa","sequence":"first","affiliation":[]}],"member":"1968","published-online":{"date-parts":[[2021,6,25]]},"reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(20)30251-8"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2012-7"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2008-3"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.abb9153"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2090"},{"key":"ref6","unstructured":"Milestones in Genomic Sequencingwww.nature.com\/collections\/genomic-sequencing-milestones"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1186\/1687-4153-2014-8"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2014.05.043"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1016\/0375-9601(95)00047-7"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2015.02.026"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.4236\/cmb.2016.62003"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygeno.2020.07.003"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.02582-15"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevLett.68.3805"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbadis.2020.165878"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2007.06.011"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1088\/0305-4470\/33\/19\/302"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1038\/nrd.2017.243"}],"container-title":["Genes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2073-4425\/12\/7\/973\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T15:30:48Z","timestamp":1624635048000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2073-4425\/12\/7\/973"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,6,25]]},"references-count":18,"journal-issue":{"issue":"7","published-online":{"date-parts":[[2021,7]]}},"alternative-id":["genes12070973"],"URL":"http:\/\/dx.doi.org\/10.3390\/genes12070973","relation":{},"ISSN":["2073-4425"],"issn-type":[{"value":"2073-4425","type":"electronic"}],"subject":["Genetics (clinical)","Genetics"],"published":{"date-parts":[[2021,6,25]]}}}
{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,12,1]],"date-time":"2022-12-01T06:15:01Z","timestamp":1669875301860},"reference-count":18,"publisher":"MDPI AG","issue":"7","license":[{"start":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T00:00:00Z","timestamp":1624579200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Genes"],"abstract":"A signal analysis of the complete genome sequenced for coronavirus variants of concern\u2014B.1.1.7 (Alpha), B.1.135 (Beta) and P1 (Gamma)\u2014and coronavirus variants of interest\u2014B.1.429\u2013B.1.427 (Epsilon) and B.1.525 (Eta)\u2014is presented using open GISAID data. We deal with a certain new type of finite alternating sum series having independently distributed terms associated with binary (0,1) indicators for the nucleotide bases. Our method provides additional information to conventional similarity comparisons via alignment methods and Fourier Power Spectrum approaches. It leads to uncover distinctive patterns regarding the intrinsic data organization of complete genomics sequences according to its progression along the nucleotide bases position. The present new method could be useful for the bioinformatics surveillance and dynamics of coronavirus genome variants.","DOI":"10.3390\/genes12070973","type":"journal-article","created":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T15:07:40Z","timestamp":1624633660000},"page":"973","source":"Crossref","is-referenced-by-count":6,"title":["Uncovering Signals from the Coronavirus Genome"],"prefix":"10.3390","volume":"12","author":[{"given":"Enrique","family":"Canessa","sequence":"first","affiliation":[]}],"member":"1968","published-online":{"date-parts":[[2021,6,25]]},"reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(20)30251-8"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2012-7"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2008-3"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.abb9153"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2090"},{"key":"ref6","unstructured":"Milestones in Genomic Sequencingwww.nature.com\/collections\/genomic-sequencing-milestones"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1186\/1687-4153-2014-8"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2014.05.043"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1016\/0375-9601(95)00047-7"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2015.02.026"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.4236\/cmb.2016.62003"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygeno.2020.07.003"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.02582-15"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevLett.68.3805"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbadis.2020.165878"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2007.06.011"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1088\/0305-4470\/33\/19\/302"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1038\/nrd.2017.243"}],"container-title":["Genes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2073-4425\/12\/7\/973\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,6,25]],"date-time":"2021-06-25T15:30:48Z","timestamp":1624635048000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2073-4425\/12\/7\/973"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,6,25]]},"references-count":18,"journal-issue":{"issue":"7","published-online":{"date-parts":[[2021,7]]}},"alternative-id":["genes12070973"],"URL":"http:\/\/dx.doi.org\/10.3390\/genes12070973","relation":{},"ISSN":["2073-4425"],"issn-type":[{"value":"2073-4425","type":"electronic"}],"subject":["Genetics (clinical)","Genetics"],"published":{"date-parts":[[2021,6,25]]}}}
Abstract
A signal analysis of the genoma sequenced of coronavirus variants: B.1.1.7, B.1.135, B.1.429-B.1.427, B.1.525 and P1 is presented. We deal with a certain type of finite alternating sum series having independently distributed terms associated with binary (0,1) indicators for the nucleotide bases A,C,G,T. This method provides additional information to conventional Similarity comparisons and Power Spectrum approaches. It leads to uncover distinctive patterns regarding the intrinsic data organization of genomic sequences according to its progression along the nucleotide bases position. Hence, the method could be useful for survelliance of genoma variants.
Copyright:
This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.