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A peer-reviewed article of this preprint also exists.
This version is not peer-reviewed
Genus | Species | Common name(s) [Abbreviation] | Genbank genome accession number | Boundaries of the X ORF in the genome sequence (in nucleotides) |
|
---|---|---|---|---|---|
Erythroparvovirus | Primate erythroparvovirus 1 |
Parvovirus B19 [B19V] |
NC_000883 | 2874-3119 | |
Erythroparvovirus | Primate erythroparvovirus 2 | Simian parvovirus | U26342.1 | 2718-2963 | |
Erythroparvovirus | Primate erythroparvovirus 3 | Rhesus macaque parvovirus | AF221122.1 | 2841 | 3080 |
Erythroparvovirus | Primate erythroparvovirus 4 |
Pig-tailed macaque parvovirus | AF221123.1 | 2563 | 2802 |
Erythroparvovirus | Rodent erythroparvovirus 1 | Chipmunk parvovirus | GQ200736.1 | 3031 | 3228 |
Erythroparvovirus | Seal parvovirus | Seal parvovirus | KF373759.1 | 2789 | 3100 |
Erythroparvovirus (*) |
Ungulate erythroparvovirus 1 | Bovine parvovirus 3 [bPARV3] | NC_037053 | 2627-2926 | |
Tetraparvovirus | Chiropteran tetraparvovirus 1 | Eidolon helvum parvovirus | NC_016744.1 | 2829-3062 | |
Tetraparvovirus | Primate tetraparvovirus 1 |
Human parvovirus 4 [PARV4] |
NC_007018.1 | 2937-3140 | |
Tetraparvovirus | Ungulate tetraparvovirus 1 | Bovine hokovirus 1 |
NC_028136 | 2857-3111 | |
Tetraparvovirus | Ungulate tetraparvovirus 2 | Porcine hokovirus | EU200677.1 | 2808 | 3062 |
Tetraparvovirus | Ungulate tetraparvovirus 5 | Deer tetraparvovirus | NC_031670.1 | 2766-3020 | |
Tetraparvovirus (*) | Ungulate tetraparvovirus 3 | Porcine parvovirus 2 [pPARV2]; Porcine cnvirus; Parvovirus YX | NC_035180 | No X ORF; boundaries of the Z ORF are 2817-3098 | |
Tetraparvovirus | Ungulate tetraparvovirus 4 | Ovine hokovirus | JF504699.1 | 2855-3112 | |
Tetraparvovirus | - | Opossum parvovirus | MG745671.1 | 2862-3092 | |
Tetraparvovirus | - | Rodent parvovirus | MG745669.1 | 2960-3217 |
Virus name | Region | Boundaries of the region with lower synonymous codon variability in the VP1 CDS | Boundaries of the corresponding ORF in the VP1 CDS |
---|---|---|---|
Parvovirus B19 | X ORF | Codons 58-163 (nucleotides 172-489) |
Codons 84-166 (Nucleotides 251-496) |
Parvovirus B19 | Y region(*) | Codons 185-239 (nucleotides 553-715) |
Codons 185-230(*) (nucleotides 553-688) |
Human parvovirus 4 | ARF1 ORF (=X ORF) |
Codons 180-263 (nucleotides 538-789) |
Codons 187-255 (nucleotides 560-763) |
Human parvovirus 4 | ARF2 ORF | Codons 294-397 (nucleotides 880-1189) |
Codons 295-379 (nucleotides 884-1135) |
Bovine parvovirus 3 | X-like ORF | Codons 205-306 (nucleotides 614-916) |
Codons 215-315 (nucleotides 644-943) |
Porcine parvovirus 2 | Z ORF | Codons 193-309 (nucleotides 577-927) |
Codons 193-285 (nucleotides 578-854) |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
supplementary.zip (4.20MB )
Submitted:
14 September 2023
Posted:
15 September 2023
You are already at the latest version
A peer-reviewed article of this preprint also exists.
supplementary.zip (4.20MB )
This version is not peer-reviewed
Submitted:
14 September 2023
Posted:
15 September 2023
You are already at the latest version
Genus | Species | Common name(s) [Abbreviation] | Genbank genome accession number | Boundaries of the X ORF in the genome sequence (in nucleotides) |
|
---|---|---|---|---|---|
Erythroparvovirus | Primate erythroparvovirus 1 |
Parvovirus B19 [B19V] |
NC_000883 | 2874-3119 | |
Erythroparvovirus | Primate erythroparvovirus 2 | Simian parvovirus | U26342.1 | 2718-2963 | |
Erythroparvovirus | Primate erythroparvovirus 3 | Rhesus macaque parvovirus | AF221122.1 | 2841 | 3080 |
Erythroparvovirus | Primate erythroparvovirus 4 |
Pig-tailed macaque parvovirus | AF221123.1 | 2563 | 2802 |
Erythroparvovirus | Rodent erythroparvovirus 1 | Chipmunk parvovirus | GQ200736.1 | 3031 | 3228 |
Erythroparvovirus | Seal parvovirus | Seal parvovirus | KF373759.1 | 2789 | 3100 |
Erythroparvovirus (*) |
Ungulate erythroparvovirus 1 | Bovine parvovirus 3 [bPARV3] | NC_037053 | 2627-2926 | |
Tetraparvovirus | Chiropteran tetraparvovirus 1 | Eidolon helvum parvovirus | NC_016744.1 | 2829-3062 | |
Tetraparvovirus | Primate tetraparvovirus 1 |
Human parvovirus 4 [PARV4] |
NC_007018.1 | 2937-3140 | |
Tetraparvovirus | Ungulate tetraparvovirus 1 | Bovine hokovirus 1 |
NC_028136 | 2857-3111 | |
Tetraparvovirus | Ungulate tetraparvovirus 2 | Porcine hokovirus | EU200677.1 | 2808 | 3062 |
Tetraparvovirus | Ungulate tetraparvovirus 5 | Deer tetraparvovirus | NC_031670.1 | 2766-3020 | |
Tetraparvovirus (*) | Ungulate tetraparvovirus 3 | Porcine parvovirus 2 [pPARV2]; Porcine cnvirus; Parvovirus YX | NC_035180 | No X ORF; boundaries of the Z ORF are 2817-3098 | |
Tetraparvovirus | Ungulate tetraparvovirus 4 | Ovine hokovirus | JF504699.1 | 2855-3112 | |
Tetraparvovirus | - | Opossum parvovirus | MG745671.1 | 2862-3092 | |
Tetraparvovirus | - | Rodent parvovirus | MG745669.1 | 2960-3217 |
Virus name | Region | Boundaries of the region with lower synonymous codon variability in the VP1 CDS | Boundaries of the corresponding ORF in the VP1 CDS |
---|---|---|---|
Parvovirus B19 | X ORF | Codons 58-163 (nucleotides 172-489) |
Codons 84-166 (Nucleotides 251-496) |
Parvovirus B19 | Y region(*) | Codons 185-239 (nucleotides 553-715) |
Codons 185-230(*) (nucleotides 553-688) |
Human parvovirus 4 | ARF1 ORF (=X ORF) |
Codons 180-263 (nucleotides 538-789) |
Codons 187-255 (nucleotides 560-763) |
Human parvovirus 4 | ARF2 ORF | Codons 294-397 (nucleotides 880-1189) |
Codons 295-379 (nucleotides 884-1135) |
Bovine parvovirus 3 | X-like ORF | Codons 205-306 (nucleotides 614-916) |
Codons 215-315 (nucleotides 644-943) |
Porcine parvovirus 2 | Z ORF | Codons 193-309 (nucleotides 577-927) |
Codons 193-285 (nucleotides 578-854) |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
David G Karlin
,
2023
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