Preprint Article Version 1 Preserved in Portico This version is not peer-reviewed

Potential Inhibitors of Lumpy Skin Disease’s Viral Protein (DNA Polymerase): A Combination of Bioinformatics Approaches

Version 1 : Received: 1 March 2024 / Approved: 12 March 2024 / Online: 13 March 2024 (07:58:39 CET)

A peer-reviewed article of this Preprint also exists.

Zia, S.; Sumon, M.-M.; Ashik, M.-A.; Basar, A.; Lim, S.; Oh, Y.; Park, Y.; Rahman, M.-M. Potential Inhibitors of Lumpy Skin Disease’s Viral Protein (DNA Polymerase): A Combination of Bioinformatics Approaches. Animals 2024, 14, 1283. Zia, S.; Sumon, M.-M.; Ashik, M.-A.; Basar, A.; Lim, S.; Oh, Y.; Park, Y.; Rahman, M.-M. Potential Inhibitors of Lumpy Skin Disease’s Viral Protein (DNA Polymerase): A Combination of Bioinformatics Approaches. Animals 2024, 14, 1283.

Abstract

Lumpy skin disease (LSD), caused by a virus within the Poxviridae family and Capripoxvirus genus, induces nodular skin lesions in cattle, spreading through direct contact and insect vectors, significantly affecting global cattle farming. Despite available vaccines, their effectiveness is limited by poor bioavailability and adverse effects. Our study aimed to identify potential inhibitors targeting LSD-associated DNA polymerase protein, selecting LSDV039 for further investigation through comprehensive analysis and computational methods. Virtual screening revealed rhein and taxifolin as potent binders among 380 phytocompounds, with respective affinities of -8.965 and -7.195 kcal/mol. Canagliflozin and tepotinib exhibited strong affinities (-9.858 and -8.856 kcal/mol) among 718 FDA-approved antiviral drugs. Molecular dynamics simulations of canagliflozin, tepotinib, rhein, and taxifolin highlighted taxifolin's superior stability and binding energy. Rhein displayed compactness in RMSD and RMSF but fluctuations in Rg and SASA, while canagliflozin demonstrated stability compared to tepotinib. The study highlights the promising potential of repurposed drugs and phytocompounds as LSD therapeutics. However, extensive validation through in-vitro, in-vivo, and clinical trials is crucial for their practical application.

Keywords

Lumpy skin disease; DNA polymerase; potential inhibitors; phytocompounds; antiviral drug compounds; molecular docking

Subject

Biology and Life Sciences, Animal Science, Veterinary Science and Zoology

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