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Article
Biology and Life Sciences
Biology and Biotechnology

Duman Yessimseit

,

Beck Abdeliyev

,

Altynai Kassenova

,

Altyn Rysbekova

,

Ziyat Abdel

,

Dana Khaltayeva

,

Svetlana Issaeva

,

Nurbol Shaki

,

Oleg Reva

,

Aigul Abdirassilova

Abstract: Reliable detection of Salmonella is essential for public health surveillance and food safety, particularly given the diversity of circulating serovars and the potential limitations of individual molecular targets. This study comparatively evaluated six candidate targets (hilA, invA, phoP, fimA, rpoS, and spvA) and developed a hilA-targeting TaqMan real-time PCR assay for Salmonella detection. To the best of our knowledge, this is the first study in Kazakhstan to apply a comparative target-selection approach to the development of a hilA-based real-time PCR assay. Among the targets evaluated, hilA demonstrated the broadest amplification coverage across the tested isolate panel, including less common serovars, whereas invA was not amplified in a subset of iso-lates. The developed assay demonstrated limits of detection of 10² CFU/mL for bacterial suspensions and 10 fg/μL for genomic DNA, with an amplification efficiency of 93.4% and an R² of 0.9988 over the linear range from 1 ng/μL to 10 fg/μL. No cross-reactivity was observed within the tested non-target bacterial panel. All 24 whole-genome sequencing-confirmed Salmonella isolates yielded positive amplification within the predefined Ct threshold (≤37), including S. enterica serovar Dublin strain 25S, which showed the highest mean Ct value (36.66 ± 0.14). The Proteus mirabilis comparator, initially identified as Salmonella by conventional bacteriology, showed no specific amplification. Salmonella DNA was also detected in both artificially contaminated food matrices tested. These findings support hilA as a promising molecular target and demonstrate the potential of the developed assay for laboratory detection, food safety investigations, and epidemiological surveillance. Further validation using broader isolate collections, naturally contaminated samples, and independent laboratories is warranted.

Article
Engineering
Transportation Science and Technology

L.D.C.H.N. Kalpana

,

Teppei Kato

,

Kazushi Sano

Abstract: Transportation network disruptions can abruptly alter travel costs and trigger day-to-day route-choice adjustments. Conventional day-to-day dynamic traffic assignment models, however, often rely on fixed-weight or uniformly decaying memory structures, limiting their ability to represent traveller learning under non-stationary conditions. This study develops a Bayes with Adaptive Memory (BAM)-based framework that selectively retains, down-weights, or discounts past travel-cost experiences according to recency and statistical significance. The BAM mechanism is integrated into a link-based day-to-day traffic assignment model to examine how adaptive memory influences perceived costs, route-choice adjustment, and post-disruption traffic-flow evolution. Numerical experiments on a hypothetical network show smoother flow trajectories, faster stabilisation, and a 41.2% reduction in mean absolute perception-tracking error compared with a conventional fixed-weight model. Under a link-removal scenario, the framework captures immediate traffic redistribution followed by gradual stabilisation toward a new post-disruption state. Sensitivity analysis reveals a trade-off between responsiveness and stability: shorter memory improves cost tracking, whereas longer memory and stronger significance weighting promote smoother adjustment and earlier convergence. Within the tested setting, the results suggest that adaptive memory provides a behaviourally plausible mechanism for representing traveller learning and may support disruption-management assessments of adjustment periods, congestion redistribution, and information provision.

Article
Computer Science and Mathematics
Computer Networks and Communications

Robert Campbell

Abstract: Cryptographic inventories and runtime detection can identify declared or observed cryptographic use, but they do not by themselves establish whether the exact implementation exhibited externally specified behavior or whether an evidence-backed use satisfies explicit policy. We present a deterministic cryptographic assurance composition that connects admitted runtime behavior to provenance-closed evidence, exact implementation identity, separately bound conformance against Contract-registered NIST test vectors, content-addressed policy appraisal, and explainable ACCEPT, REJECT, or REVIEW verdicts. Controlled SHA-256 and AES-256-GCM workloads produced 12 authentic runtime executions and six provenance-distinct occurrences. The frozen implementation subjects produced expected outputs for all 505 registered inventory entries—130/130 SHA-256 and 375/375 AES-256-GCM ENCRYPT—yielding two authentic conformance results. Under a policy frozen before authentic appraisal, all six occurrences followed the positive path to ACCEPT; controls independently demonstrated REJECT for supported policy violations and REVIEW for missing or out-of-coverage evidence. Conformance and appraisal/verdict evidence reconstructed byte-identically in 10/10 replays; 12/12 conformance controls and 25/25 appraisal, REVIEW, and anti-fabrication controls passed. No raw AES key or registered direct encoding was detected within the scanned retained-artifact boundary. These results demonstrate a reproducible bounded assurance chain across two cryptographic classes, without claiming exhaustive correctness, CAVP/CMVP validation, FIPS certification, generalized discovery, regulatory compliance, or production authorization.

Article
Computer Science and Mathematics
Security Systems

Fengsheng Zeng

,

Bahari Idrus

,

Mohammad Faidzul Nasrudin

,

Hj. Eddie Shahril Ismail

Abstract: With the rapid advancement of quantum computing technology, IoT edge devices widely deployed in industrial settings are facing severe threats to their quantum-resistant security. this work focuses on the challenges of adapting Quantum Key Distribution (QKD) and Post-Quantum Cryptography (PQC) for resource-constrained environments. this work systematically identifies four critical obstacles: difficulties in physical integration due to device heterogeneity; constraints imposed by the limited computing power and storage resources of edge nodes on PQC algorithm execution; compatibility gaps between QKD/PQC and existing industrial protocols (such as Modbus and Profinet); and the engineering cost pressures associated with large-scale deployment. To address these issues, the paper proposes three lightweight countermeasures:(1) A tiered deployment architecture for quantum-safe security that accommodates device heterogeneity, enabling dynamic trade-offs between security strength and resource overhead; (2) middleware facilitating the synergy of quantum-classical hybrid network protocols, ensuring seamless integration between QKD/PQC and industrial control protocols; and (3) a distributed key management mechanism featuring three-level collaboration—edge node, network proxy, and central system—which offloads computation- and storage-intensive tasks to high-resource nodes, thereby alleviating bottlenecks at the edge. Experimental validation within a smart manufacturing factory's sensor network demonstrates that this scheme maintains quantum-safe capabilities while reducing per-node deployment costs by approximately 81.7% compared to pure QKD solutions and by about 32% compared to pure PQC solutions, all while facilitating seamless, non-disruptive upgrades. This study indicates that lightweight algorithm design, hardware-software co-optimization, and tiered architectural deployment constitute a viable pathway for advancing IoT edge security into the quantum-safe era.

Article
Physical Sciences
Quantum Science and Technology

John T. Solomon

Abstract: Quantum uncertainty and wavefunction collapse remain among the most conceptually unresolved aspects of microscopic physics. Here, we investigate whether uncertainty and collapse-like electron localization may admit a complementary thermodynamic interpretation through recursive entropy-field dynamics. The electron is modeled as a dynamically evolving entropy field–geometry composed of structural, electromagnetic, and thermal entropy components maintained through continuous recursive interaction with the surrounding vacuum entropy field. Within this framework, uncertainty emerges from incomplete temporal accessibility to rapidly evolving recursive electron configurations occurring beneath experimentally accessible timescales. Repeated recursive phase sampling naturally produces probabilistic measurement statistics and approximately Gaussian localization statistics. Electron–photon interaction is further modeled through phase-matched recursive entropy coupling, where repeated entropy transfer progressively reorganizes the electron entropy geometry toward localization. Numerical simulations reproduce finite-width Dirac-delta-like localization behavior, localization saturation after a finite number of recursive cycles, and intrinsically nonzero collapse timescales, with a lower bound of approximately 3.2×10−20s for an electron at rest under ideal recursive coupling. These results suggest that wavefunction collapse may emerge as a finite recursive thermodynamic localization process rather than an instantaneous state projection. The framework further provides a qualitative thermodynamic interpretation that relates normalized recursive accessibility to Born probability, discusses recursive entropy evolution as a possible physical basis for intrinsic quantum timescales, and outlines how Bell-type correlations may emerge within an extended recursive entropy framework. Together, these results establish a phenomenological foundation for recursive entropy dynamics underlying quantum uncertainty and localization while providing experimentally testable predictions and a systematic roadmap for future quantitative development.

Article
Engineering
Other

Okba Fergani

Abstract: The increasing integration of communication networks, intelligent electronic devices, distributed energy resources, and automated control has transformed the electric grid into a tightly coupled cyber-physical system. This transformation also creates opportunities for false-data injection attacks (FDIAs), in which adversaries manipulate measurements or telemetry to bias state estimation and influence operational decisions. Coordinated FDIAs are especially challenging because several measurements, devices, or communication paths can be manipulated in a spatially and temporally consistent manner. A detector that examines individual measurements in isolation may therefore fail to identify an attack that appears plausible at each local point while being harmful at system level. This paper develops a cyber-physical resilience framework for coordinated FDIAs. The framework extends protection beyond attack detection by organizing defenses into preparation, observation, detection, localization, response, recovery, and adaptation. It combines physics-based state estimation with data-driven anomaly detection, network and device telemetry, adaptive measurement trust, and operational safeguards. The paper also proposes a reproducible simulation protocol for evaluating the framework on benchmark power-system models under different attack coverage, duration, grid-condition, and communication-failure scenarios. Rather than reporting unperformed experiments, the manuscript defines the metrics, baselines, ablation studies, and reporting standards required for a credible empirical evaluation. Finally, it discusses how recent work on adversarially robust photovoltaic diagnosis can inform hybrid detector design while distinguishing photovoltaic fault diagnosis from grid-level FDIA detection. The result is a structured research agenda for designing smart-grid defenses that preserve safe operation, not merely classification accuracy.

Article
Social Sciences
Tourism, Leisure, Sport and Hospitality

Alexis-Raúl Garzón-Paredes

,

Marcelo Royo-Vela

Abstract: Cultural tourism is usually identified from travellers’ primary motive, yet what visitors actually do at the destination may reveal a broader heritage market. Using a hypothetico-deductive design, this study examines 3,551 trip records from the March 2026 public-use file of Spain’s Encuesta de Turismo de Residentes (ETR/FAMILITUR), applying official survey weights. Cultural engagement is derived from reported cultural visits, performances, and other cultural activities. Among culturally engaged travellers, 56.4% did not report culture as their primary motive (bootstrap 95% CI: 52.5–60.5%), and agreement between motive- and engagement-based classifications was only moderate (κ = 0.459). Multiple correspondence analysis and weighted latent class analysis support a four-class solution (BIC = 36,486.13; entropy = 0.832). The Urban-Cultural Explorers class accounts for 21.2% of weighted trips, although only 46.1% of its members report a cultural primary motive. In adjusted models, cultural engagement is associated with approximately 14.0% higher total expenditure (p < 0.001), whereas stated cultural motivation is not significant. Engagement also performs better in information-criterion comparisons and repeated cross-validation. No significant satisfaction effect is detected; cultural engagement is associated with lower previous visitation, and hidden heritage tourists exhibit a distinct multivariate trip profile. Overall, the results reveal a measurable motivation–engagement gap with implications for heritage-market sizing, segmentation, and economic-value assessment.

Article
Computer Science and Mathematics
Probability and Statistics

Hilaire A Nzokem

Abstract: This study provides a unified theoretical and empirical examination of the generalized hyperbolic (GH) distribution family. The special and limiting relationships among the GH distribution and its important subclasses are reviewed. The empirical analysis considers daily returns on the SPDR SP 500 ETF Trust (SPY) from January 4, 2010, to July 22, 2024. The unrestricted GH distribution and its variance–gamma(VG), normal–inverse Gaussian (NIG), normal reciprocal inverse Gaussian (NRIG), hyperbolic (H), and HA subclasses are estimated by maximum likelihood method. Overall, the results demonstrate that the GH family provides a flexible and effective alternative to the Gaussian benchmark, although the preferred subclass depends on whether predictive adequacy or model parsimony is emphasized.

Article
Engineering
Energy and Fuel Technology

Ryo Arishima

,

Jun Matsushima

Abstract: Geothermal resource quality alone does not determine whether a project can be developed under favorable local and institutional conditions. This study integrates thermodynamic resource quality with site-level development feasibility for 18 Japanese geothermal sites included in a published Specific Exergy Index (SExI) dataset. Development feasibility is represented by a weighted score based on four criteria: hot-spring conflict risk, environmental and zoning constraints, consensus-building and regional acceptance, and infrastructure accessibility. SExI and development feasibility show a positive but statistically non-significant association (Pearson r = 0.430, p = 0.075). Using thresholds of 0.5 on both axes, 5 sites are classified as high SExI/high feasibility, 1 as high SExI/low feasibility, 6 as low SExI/high feasibility, and 6 as low SExI/low feasibility. Alternative weighting scenarios preserve the baseline quadrant membership, although sites near the feasibility threshold remain more sensitive to scoring assumptions. These results show that thermodynamic quality and development feasibility are related but distinct dimensions. The proposed matrix provides an exploratory screening framework for identifying whether geothermal development is primarily limited by resource quality or by site-specific socio-institutional conditions.

Article
Computer Science and Mathematics
Security Systems

Ade Yoseman Putra

,

Rusdianto Roestam

Abstract: Network intrusion detection requires accurate classification of high-volume network traffic while maintaining reliable evaluation and practical analyst support. This study presents a supervised network anomaly-classification workflow using the BigFlow-NIDS V2 benchmark, integrating leakage-aware data separation, SMOTE-Tomek balancing, FlowTransformer classification, confidence and novelty scoring, bounded Large Language Model (LLM) assistance, and analyst triage. The quantitative experiment uses a controlled binary subset of Benign and Scanning traffic, comprising 3,972 usable flows and 795 independent test observations. On the independent test set, FlowTransformer achieved 0.9107 accuracy, 0.9119 macro-precision, 0.9105 macro-recall, 0.9106 macro-F1, 0.9105 balanced accuracy, MCC of 0.8225, Cohen's kappa of 0.8213, and macro PR-AUC of 0.959. A RandomForest baseline achieved 0.9308 accuracy. Paired McNemar, Wilcoxon, and t-tests indicated a statistically significant difference, with the baseline performing better on this test set. The LLM was restricted to bounded advisory analysis, while analyst triage remained separate from model outputs. The results provide a reproducible binary evaluation and a basis for extending the workflow to the full multiclass benchmark.

Article
Environmental and Earth Sciences
Atmospheric Science and Meteorology

Sotirios T. Arsenis

,

Ioannis Kapsomenakis

,

Panagiotis T. Nastos

Abstract: Atmospheric blocking is a major feature of mid-latitude circulation and is closely associ-ated with the occurrence of extreme weather events over Europe. Among the different blocking regimes, Omega blocks are characterized by their persistent tripolar structure, which favors the development of prolonged heatwaves. In late June 2026, Western Eu-rope experienced one of the earliest and most intense heatwaves of recent decades. This study investigates the synoptic, dynamical, and climatic mechanisms associated with this event using ERA5 reanalysis data. The evolution of the 500 hPa geopotential height, 850 hPa temperature, polar jet stream, Rossby wave breaking, and dynamical tropopause (2 PVU) was analyzed together with anomalies in sea surface temperature (SST), meridional temperature gradient, soil moisture, and sensible heat flux. The results show that the heatwave developed under a persistent Omega blocking pattern, which promoted strong subsidence, enhanced solar heating, and sustained warm air advection over Western Europe. The event was further amplified by land–atmosphere feedbacks associated with anomalously dry soils. In addition, a pronounced cold SST anomaly over the subpolar North Atlantic preceded the onset of the blocking and coincided with a weakened me-ridional temperature gradient and reduced lower-tropospheric baroclinicity along the climatological position of the polar jet stream. These findings are consistent with recent studies suggesting that North Atlantic cooling associated with a weakened Atlantic Me-ridional Overturning Circulation (AMOC) may create favorable conditions for persistent summer Omega blocking and associated European heatwaves.

Article
Medicine and Pharmacology
Epidemiology and Infectious Diseases

José W. Lopez

,

Alicia A. Segura-Grados

,

Emily Olascoaga-Mori

,

Harold J. Rodriguez-Madueño

Abstract:

Azole resistance in Aspergillus fumigatus is an emerging threat to invasive and chronic aspergillosis management, yet multicenter trend analyses rarely verify whether the composition of surveillance data remained stable over time. We performed a longitudinal, secondary-data analysis of 2,111 Aspergillus isolates registered in the VIVLI AMR platform (ATLAS Antifungals, SENTRY Program) between 2010 and 2020. Because Clinical and Laboratory Standards Institute (CLSI) voriconazole breakpoints are established only for A. fumigatus in this dataset, the susceptibility-trend analysis was restricted to A. fumigatus isolates with a valid interpretation (n = 1,482/1,483). A. fumigatus accounted for 70.3% of all Aspergillus isolates; most originated from Europe (43.9%) and North America (35.2%). Region and clinical specialty differed significantly across the three study periods (both p < 0.0001), while species, age, sex and specimen-source distributions remained stable (p > 0.10). Voriconazole susceptibility in A. fumigatus declined from 97.9% (2010) to 90.4% (2020), with a significant linear downward trend (Cochran-Armitage Z = −3.03, p = 0.002). This decline was statistically robust, but the concurrent shift in participating regions and specialties indicates that compositional changes in surveillance sampling should be considered alongside biological resistance emergence when interpreting multicenter antifungal surveillance trends.

Article
Computer Science and Mathematics
Geometry and Topology

Saeid Jafari

,

Giorgio Nordo

,

Lorenzo Affè

Abstract: Let (X,τ) be a topological space and let τh(X) denote the topology formed by the h-open subsets of X. We develop h-density, h-separability and countable h-dense homogeneity systematically through the associated space (X, τh(X)). We prove that h-density and h-separability are precisely ordinary density and separability in the associated topology, and that h homeomorphisms are exactly homeomorphisms between associated spaces. Consequently, (X,τ) is h-countable dense homogeneous (h-CDH) if and only if (X, τh(X)) is countable dense homogeneous (CDH). A classical theorem on CDH spaces then yields that every h-CDH space is h-T1. Hence its h-specialization preorder is equality, hCl({x}) = hKer({x}) = {x} for every point, and the pointwise closure–kernel defect measured by the h-RT condition vanishes identically. We give explicit examples showing that or dinary CDH and h-CDH are incomparable in general, while they coincide in Hausdorff spaces. We formulate a product-transfer principle for arbitrary families under compatibility of associated and product topologies and show, using a metrizable counterexample, that compatibility alone does not make h-CDH productive. Finally, we relate the theory to h-normality, including an infinite-product transfer criterion, and formulate several questions concerning normality, product compatibility and converses to the h-RT consequence.

Article
Computer Science and Mathematics
Geometry and Topology

Saeid Jafari

,

Lorenzo Affé

,

Takashi Noiri

,

Giorgio Nordo

Abstract: We introduce and investigate forms of regularity and normality defined by means of h-open sets. Using the associated topology τh = hO(X), we interpret h-regularity as a relative regularity property in which points and closed sets of the original topology are separated by τh-open sets, whereas strong h-regularity is precisely the ordinary regularity of (X, τh). We establish characterizations of h-regularity, study its preservation under suitable mappings, compare the new notions with their classical counterparts, and examine related separation properties.

Article
Public Health and Healthcare
Physical Therapy, Sports Therapy and Rehabilitation

Galya Georgieva-Tsaneva

Abstract: Heart rate variability (HRV) is a noninvasive marker of cardiac autonomic regulation, suitable for use in monitoring training adaptation and recovery in athletes. Group-level analyses may mask significant interindividual variability in responses to the same training stimulus if changes are divergent. This study investigated whether competitive wrestlers exposed to a standardized training protocol exhibit different multivariate patterns of cardiac autonomic response. Their evolution during a four-month training period was also investigated. Holter recordings were obtained before and immediately after training, with assessments performed at five measurement points. Temporal, frequency, nonlinear, and fractal parameters of HRV were analyzed. Individual percent changes before and after training were assessed using inferential and correlation analysis, principal component analysis (PCA), and hierarchical clustering. Two distinct physiological response profiles were identified. The predominant profile is characterized by increased heart rate and decreases in RMSSD, SDNN, SampEn, and other vagally mediated HRV indices. A smaller subgroup shows the opposite response pattern with preserved or increased variability. The profiles are differentiated by changes in RMSSD, SDNN, and LF/HF. The first two principal components explain 80.53% of the total variance. Hierarchical clustering and cluster quality indicators support multivariate separation. Longitudinal assessment shows that contrasting profile-specific directions of response remain distinguishable during the four-month training period. The magnitude of several acute HRV responses is observed to change over time. Identical training stimuli can elicit different cardiac autonomic responses among wrestlers. The study supports longitudinal HRV profiling as a complementary approach for individualized athlete monitoring and training response assessment.

Article
Medicine and Pharmacology
Oncology and Oncogenics

Mehmet Fatih Ozbay

,

Mehmet Hunur

,

Sertac Vurgun

,

Suleyman Alkan

,

Sema Sezgin Goksu

,

Mustafa Karaca

Abstract: Background: Tumour-growth kinetics required to diagnose hyperprogressive disease are often unavailable in routine care. We developed baseline and dynamic clinical–laboratory models for progression or death within 90 days (EPD90), a pragmatic endpoint for early clinical deterioration, and assessed whether six-week laboratory change improved risk estimation. Methods: This retrospective single-centre cohort included consecutive adults with advanced or unresectable non-small cell lung cancer treated with PD-1/PD-L1 blockade between January 2018 and March 2026. EPS-4 combined bone metastasis, lactate dehydrogenase (LDH) >240 U/L, albumin < 3.5 g/dL and C-reactive protein >10 mg/L. Day-42 landmark models added log2 ratios of neutrophil-to-lymphocyte ratio (NLR) and LDH. Performance was assessed with 2000 bootstrap resamples and repeated cross-validation. Results: Among 282 assessable patients, 83 (29.4%) had EPD90. In common complete cases (n = 252; 76 events), EPS-4 had an AUC of 0.729 (95% CI 0.665–0.793). Among 238 patients alive and progression-free at day 42 (56 subsequent events), AUC increased from 0.718 for EPS-4 alone to 0.801 after adding NLR change and 0.816 after adding LDH change. The final increment from LDH was modest (ΔAUC 0.016; P = 0.094). Conclusions: Baseline EPS-4 and early NLR change identified higher-risk patients, but the models remain development-stage and require independent prospective validation.

Review
Public Health and Healthcare
Other

Barbara D'Andrea

,

Antonietta Montagna

,

Ilaria Benevento

,

Luciana Rago

,

Vito Metallo

,

Gerardo Morano

,

Melissa Romaniello

,

Fortunata Possidente

,

Vincenzo Defina

,

Antonella Bianculli

+6 authors

Abstract: In post-prostatectomy prostate cancer, combining androgen deprivation therapy (ADT) with salvage radiotherapy (SRT) significantly improves clinical outcomes, though the absolute benefit varies based on baseline PSA, pathological risk, and treatment design. This review synthesizes findings from key randomized trials and contemporary meta-analyses including RTOG 9601, SPPORT, GETUG-AFU 16, GETUG-AFU 22, and RADICALS-HD evaluating the integration and duration of ADT with postoperative irradiation. While systemic therapy consistently enhances biochemical and clinical progression-free survival, a universal overall survival benefit remains uncertain or limited to high-risk cohorts with elevated pre-treatment PSA values. Concurrently, data from the prospective phase II trials OLIGOPELVIS (GETUG P07) and PEACE V - STORM are redefining the standard of care for pelvic nodal oligorecurrent disease detected via next-generation imaging (NGI). Transitioning away from exclusive lifelong ADT or isolated focal metastasis-directed therapy, emerging evidence strongly supports a multimodal paradigm: combining prostate bed RT, whole-pelvis elective nodal irradiation, and a high-dose boost to PET-positive nodes, complemented by a short course of systemic therapy. This narrative review provides readers with effective indication to use adjuvant HT according recent literature evidences to maximizes regional disease control and delays systemic progression, while successfully sparing the majority of patients from the toxicities of continuous androgen deprivation.

Article
Biology and Life Sciences
Biophysics

Arturo Tozzi

Abstract: Chromatin spatial organization is commonly described through compaction, contact frequencies, chromosome territories, loops and polymer dynamics, yet these measures do not address how nuclear confinement shapes accessible genome configurations. We introduce the concept of chromatin congestion to describe changes in the geometrically, topologically and mechanically admissible chromatin configurations within a confined nucleus, integrating directional geometric constraints, topological obstruction, stochastic exploration, mechanical deformation and long-range dependence into a common description. We performed stochastic simulations of 480 nuclei across six microchannel widths from 14 to 4 micrometers, keeping chromatin content constant and quantifying collision-free path length, locus displacement, topological encounters, curvature, bending work, perturbation propagation and DNA-damage burden. As confinement progressed, chromatin displacement initially increased, consistent with exploration of the configurations still available, but declined under stronger restriction. Topological encounters, curvature and mechanical work increased, while perturbations extended across progressively larger nuclear regions and were associated with greater damage burden. Our simulations suggest that progressive confinement can drive transition from locally buffered chromatin dynamics to increasingly collective genome behaviour, characterized by stronger spatial interdependence among genomic regions. Potential applications include microfluidic migration experiments, single-cell nuclear phenotyping and the integration of imaging, mechanical and genome-organization measurements.

Brief Report
Physical Sciences
Space Science

Aswin Karakadakattil

Abstract: TOI-2076 is a young, compact multi-planet system whose orbital architecture places its adjacent planets close to low-order mean-motion commensurabilities. We investigate the dynamical stability and near-resonant behaviour of the system using direct N-body simulations with the REBOUND package and the WHFast symplectic integrator. Three independent realizations, initialized with randomized orbital phases, were integrated for t = 2 ×106 yr using a timestep of Δt = 0.5 days. All three realizations remained stable throughout the simulations, with no planetary ejections or collisions. The eccentricities showed bounded oscillations without clear secular growth, with mean standard deviations of \( {\sigma }_{e_{b}}=0.00382, {\sigma }_{e_{c}}=0.00329 \), and \( {\sigma }_{e_{d}}=0.00335 \) for TOI-2076 b, c, and d, respectively. The nominal period ratios are \( \frac{P_{c}}{P_{b}}=1.6577 \) and \( \frac{P_{d}}{P_{c}}=2.0461 \), compared with the exact 5:3 and 2:1 commensurabilities of 1.6667 and 2.0000, respectively. The corresponding resonance angles circulate through the full 0°C–360°C range rather than remaining confined to a bounded libration region, indicating that the simulated configurations remain near-resonant without evidence of resonance locking over the 2 Myr integration. The period ratios also remain nearly constant throughout the simulations, with no systematic evolution toward exact commensurability. Overall, the results show that the adopted TOI-2076 configuration remains dynamically stable over the simulated interval while maintaining a near-resonant, non-librating orbital architecture. These results provide a numerical baseline for future studies using longer integrations and a broader exploration of uncertainties in the planetary orbital and physical parameters.

Article
Computer Science and Mathematics
Artificial Intelligence and Machine Learning

Souraj Adhikary

,

Negar Chabi

,

André Mastmeyer

Abstract: The centerline Dice coefficient (clDice) is used to evaluate tubular segmentations, but a high score does not directly test whether the predicted centerline is connected. We examined this limitation for structures only a few voxels wide. First, we eroded smooth and irregular synthetic tubes while varying their radius. Second, we compared Dice, clDice, ccDice, connected-component error and Betti matching on 235 held-out PANORAMA pancreatic-duct predictions. We also tested operating-point sensitivity, component cleanup, connectivity definitions, local thickness, graph measurements and two manually labeled retinal datasets. In the tested synthetic setting, mean clDice first exceeded 0.90 at a radius of 2.50 voxels, whereas every tested skeleton remained connected only from 2.90 voxels. At radius 2.80, mean clDice was 0.990 although none of the five skeletons preserved the reference component count. In the CT cohort, Dice and clDice were strongly associated across cases (Spearman ρ=0.857), yet 54 of 86 predictions with Dice &gt;0.85 differed from the reference in component count; 51 of these also had clDice &gt;0.85. The 2.90-voxel value is specific to the synthetic setup and is not transferred to clinical CT. For structures only a few voxels wide, clDice should be reported together with a direct connectivity measure.

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