The Genome Assembly of the King Ratsnake Elaphe carinata, Helps Reveal Its Biological Characteristics

Jiale Fan; Ruyi Huang; Diancheng Yang; Yanan Gong; Zhangbo Cui; Xinge Wang; Zicheng Su; Jing Yu; Yi Zhang; Tierui Zhang; Zhihao Jiang; Tianming Lan; He Wang; Song Huang

doi:10.20944/preprints202308.1797.v1

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preprints.org > biology and life sciences > life sciences > doi: 10.20944/preprints202308.1797.v1

Preprint Article Version 1 Preserved in Portico This version is not peer-reviewed

The Genome Assembly of the King Ratsnake Elaphe carinata, Helps Reveal Its Biological Characteristics

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Version 1 : Received: 25 August 2023 / Approved: 25 August 2023 / Online: 25 August 2023 (09:35:48 CEST)

How to cite: Fan, J.; Huang, R.; Yang, D.; Gong, Y.; Cui, Z.; Wang, X.; Su, Z.; Yu, J.; Zhang, Y.; Zhang, T.; Jiang, Z.; Lan, T.; Wang, H.; Huang, S. The Genome Assembly of the King Ratsnake Elaphe carinata, Helps Reveal Its Biological Characteristics. Preprints 2023, 2023081797. https://doi.org/10.20944/preprints202308.1797.v1 Fan, J.; Huang, R.; Yang, D.; Gong, Y.; Cui, Z.; Wang, X.; Su, Z.; Yu, J.; Zhang, Y.; Zhang, T.; Jiang, Z.; Lan, T.; Wang, H.; Huang, S. The Genome Assembly of the King Ratsnake Elaphe carinata, Helps Reveal Its Biological Characteristics. Preprints 2023, 2023081797. https://doi.org/10.20944/preprints202308.1797.v1

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MDPI and ACS Style

Fan, J.; Huang, R.; Yang, D.; Gong, Y.; Cui, Z.; Wang, X.; Su, Z.; Yu, J.; Zhang, Y.; Zhang, T.; Jiang, Z.; Lan, T.; Wang, H.; Huang, S. The Genome Assembly of the King Ratsnake Elaphe carinata, Helps Reveal Its Biological Characteristics. Preprints 2023, 2023081797. https://doi.org/10.20944/preprints202308.1797.v1

APA Style

Fan, J., Huang, R., Yang, D., Gong, Y., Cui, Z., Wang, X., Su, Z., Yu, J., Zhang, Y., Zhang, T., Jiang, Z., Lan, T., Wang, H., & Huang, S. (2023). The Genome Assembly of the King Ratsnake Elaphe carinata, Helps Reveal Its Biological Characteristics. Preprints. https://doi.org/10.20944/preprints202308.1797.v1

Chicago/Turabian Style

Fan, J., He Wang and Song Huang. 2023 "The Genome Assembly of the King Ratsnake Elaphe carinata, Helps Reveal Its Biological Characteristics" Preprints. https://doi.org/10.20944/preprints202308.1797.v1

Abstract

The king ratsnake (Elaphe carinata) of the genus Elaphe is a common large non-venomous snake that is widely distributed in Southeast and East Asia, and is an economically important farmed snake species. As a non-venomous snake, the king snake that is predatory on venomous snakes such as cobras and pit vipers. The immune mechanisms of which has been unclear. Despite their economic and research importance, genomic resources which will benefit studies in toxicology, phylogeography and immunogenetics are lacking. In this study, we use single-tube long fragment read (stLFR) sequencing to display the first complete genome of a King ratsnake from Huangshan City, Anhui province in China. The genome size is 1.56GB with a scaffold N50 of 6.53M, the total length of the genome is approximately 621Mb, and the repeat content is 38.90%. Additionally, we predicted 22,339 protein-coding genes, of which 22,065 had functional annotations. Our genome is a potentially useful addition to those currently available for snakes.

Keywords

Genetics and Genomics; Zoology; Animal Genetics

Subject

Biology and Life Sciences, Life Sciences

Copyright: This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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