(1) Background: The goal of our study was to identify SNPs, metabolic pathways (KEGG), and gene ontology (GO) terms significantly associated with calving and workability; (2) Methods: Based on the EuroGenomics reference data set, we analyzed direct (DCE) and maternal (MCE) calving ease, direct (DSB), and maternal (MSB) stillbirth, milking speed (MSP), and temperament (TEM). We estimated SNP effects using a multi-SNP mixed-model. Further, SNP positions were mapped to genes, and GO terms/KEGG pathways of the corresponding genes were assigned. The estimation of GO term/KEGG pathway effects was based on a mixed-model using SNP effects as dependent variables; (3) Results: The number of significant SNPs comprised 59 for DCE, 25 for DSB and MSP, 17 for MCE and MSB, and 7 for TEM. Significant KEGG pathways were found for MSB (2), TEM (2), and MSP (1), while 11 GO terms were significant for MSP, 10 for DCE, 8 for DSB and TEM, 5 for MCE, and 3 for MSB.; (4) Conclusions: From the perspective of a better understanding of the genomic background of the phenotypes, traits with low heritabilities suggest that the focus should be moved from single genes to metabolic pathways or gene ontologies significant for the phenotype.

In this paper, we present a framework that automatically labels Latent Dirichlet Allocation (LDA) generated topics using sentiment and aspect terms from COVID-19 tweets to help the end-users by minimizing the cognitive overhead of identifying key topics labels. Social media platforms especially Twitter are considered as one of the most influential sources of information for providing public opinion related to a critical situation like the COVID-19 pandemic. LDA is a popular topic modelling algorithm that extracts hidden themes of documents without assigning a specific label. Thus automatic labelling of LDA-generated topics from COVID-19 tweets is a great challenge instead of following the manual labelling approach to get an overview of wider public opinion. To overcome this problem, in this paper, we propose a framework named \texttt{SATLabel} that effectively identifies significant topic labels using \textit{top unigrams features of sentiment terms and aspect terms clusters from LDA generated topics} of COVID-19 related tweets to uncover various issues related to the COVID-19 pandemic. The experimental results show that our methodology is more effective, simpler, and traces better topic labels compare to the manual topic labelling approach.

Considerable efforts have been devoted to modifying gravity, which aim to elucidate the possible existence or nature of dark matter and dark energy, achieve a better description of observation data, verify theoretical restrictions in the strong curvature regime and to formulate quantum gravity. In addition, despite the enormous success of the quantum field theory, the framework requires the so-called renormalization techniques and breaks down at high energies. Recently, the Planck Legacy 2018 release has confirmed the presence of an enhanced lensing amplitude in the cosmic microwave background power spectra, which prefers a positively curved early Universe with a confidence level greater than 99%. This study considers the implied positive curvature of the early Universe as the curvature of ‘the background or the 4D conformal bulk’ and distinguishes it from the localized curvature that is induced into the bulk by the presence of comparably smaller celestial objects that are regarded as ‘4D relativistic cloud-worlds’. To consider the interaction between the bulk and cloud-worlds, this paper presents interaction field equations in terms of the brane-world modified gravity counting for the bulk conformal curvature and the boundary terms, which could remove the singularities and satisfy a conformal invariance theory. Similarly, the quantum fields and clouds are regarded as ‘4D relativistic branes’ embedded in vacuum energy of a field strength reliant on the background curvature due to gravity. A visualization of the evolution of the 4D relativistic cloud-worlds over the conformal space-time of the 4D bulk is presented.

The first appearance of viruses can date back to the late last century. As an effective form of malware, viruses reside in the permanent storage of target hosts. Before a virus can execute, that must load into memory from the persistent storage included in the associated file. Due to the reliable destructive power of viruses, many mechanisms have been developed to defend computer systems against these hazardous threats. Antivirus software is one of the most famous and popular among these mechanisms. Most antivirus software uses static analysis (signature-based) technology on files stored in permanent storage, such as hard disks or USB flashes, to detect viruses hidden in files. Fileless malware was developed to enhance the survivability of malware by circumventing detection. Fileless malware only exists in the target hosts’ memory, not files. Antivirus software cannot even access the fileless malware code, much less analyze it, since it may be performed in memory directly without needing to load it from a disk. As a result, it is difficult for an antivirus engine to defend a system against fileless malware attacks. This paper proposes a kernel-based solution called Check-on-Execution (CoE) to detect fileless malware on a Linux system. When a program is going to execute a piece of code in a writable and executable memory area of a process, CoE suspends the code execution first. Coe retrieves the code from memory, packs the code with an ELF header to create an ELF file, and uses VirusTotal to check the file to prevent a Linux system from executing fileless malware. Experimental results show that CoE noticeably enhances the ability of a Linux system to defend itself again fileless malware. CoE is also suitable for protecting a system from shell code injection attacks, such as buffer and heap overflow attacks. It is capable of handling even packed malware. But in this paper, we only focus on fileless malware.

In this research paper, we implement the theory of the primorial function, to develop the Supremum and Infimum bounds for the sum of (log(p))². There are, however, considerable computational difficulties related to these bounds. Therefore, from a pragmatic point of view, a set of Upper and Lower bounds had been developed to bypass this issue. Despite the increased estimation error, the Upper and Lower bounds are still considered sufficiently accurate, while facilitating an easy and fast computation of the estimate of the sum.

The radial distribution networks are designed for unidirectional power flows and are passive in nature. However, with the penetration of Distributed Generation (DG), the power flow becomes bidirectional and the network becomes active. The integration of DGs into distribution network creates many issues with: system stability, protection coordination, power quality, islanding, proper placement and sizing etc. Among these issues, the two most significant are optimal sizing and placement of DGs and their protection coordination in utility network. The proper coordination of relays with high penetration of DGs placed at optimal location increases the availability and reliability of the network during abnormal operating conditions.This research addresses most of the available methods for efficient sizing and placement of DGs in distribution system (numerical, analytical and heuristic) as well as the developed protection coordination techniques for utility networks in the presence of DGs (Artificial Intelligence (AI), adaptive and non-adaptive, multi-agent, hybrid). This paper indicates the possible research gaps and highlights the applications possibilities and methods’ limitations in the area of DGs.

The world of science is drowned in a wealth of information. How to make sense of this wealth of published articles, blog posts and abstracts has become an important challenge given the importance of science to different aspects of societal function. At the crux of the issue lies the increasing trend where scientific discovery informs decision making at the societal level. One example, is the elucidation of the ozone hole to the promulgation of the Montreal Protocol in 1987, and documenting increasing atmospheric carbon dioxide concentration led to climate action and signing of the Paris Agreement in 2015. Hence, understanding a research field becomes an important need for many decision makers across different sectors of society. But, the scientific literature is cryptic and esoteric, and presents a significant barrier to comprehension. One approach to ameliorate the problem is statistical machine reading, which provides the critical capability of identifying key concepts that underpins a research field. Such important concepts help provide an incision point to gain further understanding of the field and initiating further conversation about the field. This work sought to validate the concept of whether applying statistical machine reading to a body of literature comprising short blog posts and abstracts of published articles help in understanding the field of metabolic engineering. One important angle pursued in this research is whether the tabulated list of terms and phrases identified by statistical machine reading could be creatively analyzed to gain a deeper understanding of the research field. For example, the most frequently occurring terms and phrases could describe key concepts of the research field. Moving down in frequency occurrence would be terms and phrases that describe methodologies and approaches of the field. Finally, less frequently occurring terms and phrases may be tools and resources used in the research field. Results validated the utility of statistical machine reading in identifying important terms and phrases associated with the research field. But the small dataset of blog posts and abstracts used in this study severely hampered the identification of most of the key concepts of metabolic engineering, which is a fairly broad field of research. Overall, statistical machine reading shows utility in identifying terms and phrases that could describe a field. However, the level of understanding is closely tied in to the breadth and depth of reading material available, which meant that the methodology is data intensive in nature. Future use of supercomputing or quantum computing could help alleviate constraints of computational capacity, and help tackle the exponential rise in computational complexity as the size of the reading material for machine reading expands.

The purpose of this article is to demonstrate the ability of bibliometric data from the Lens platform to identify relevant bibliometric/scientometric issues based on the construction of a network of key terms co-occurrence and their clustering. The advantages of using the Lens platform for bibliometric analysis are briefly demonstrated. Key terms were selected on the basis of n-grams and noun phrases. VOSviewer, Scimago Graphica, and Sifaka text mining application were used as analytical tools. Analysis of the Lens metadata on bibliometrics/scientometrics showed their predominant use in the political, social, and medical fields of research.

Occasionally, officials of the world’s regulatory agencies embark upon attempts at bringing previously unregulated physical systems under regulation by them. Each such attempt raises an epistemological issue. At issue is whether enough information about the outcomes of the events of the future, given the outcomes of the events of the present, will be in the hands of a would-be regulator for this regulator to regulate effectually. If present, this information is provided by runs of a model of the physical system that is slated for regulation. Ideally, this model makes an argument that draws its conclusion from the evidence presented to it. If so, this argument is of the form of a predictive inference. However, the process by which an argument draws its conclusion from the evidence may go awry. This happens, for example, when the axiom of probability theory called unit measure is falsified by a conclusion that is drawn from the evidence by this argument.A method is derived from first principles for determination of whether unit measure is satisfied or falsified by an argument made by a model, given that this argument may attach unusual meanings to statistical terms. This method is used in a study of whether unit measure is satisfied or falsified by the arguments that are made by a pair of models. Both models are in active use by regulatory agencies around the world. Under neither argument do runs of the model provide an official of a regulatory agency with the information gain aka mutual information that he or she would need to regulate effectually. Under both arguments, attachment of unusual meanings to statistical terms creates the illusion that such an official can and does regulate effectually.

This paper presents a comprehensive analysis of the SEIRS COVID-19 pandemic model with saturated incidence rate. By modifying the existing model and proposing a new simplified version, we investigate the dynamics of disease transmission, including the impact of saturation terms on disease spread. Through stability analysis at disease-free and endemic equilibria, we aim to enhance understanding of the spread of COVID-19 and inform effective control strategies. Drawing on mathematical models and epidemiological insights, this study contributes to the ongoing efforts to combat the global pandemic.

The number and size of computational models in biology have drastically increased over the past years and continue to grow. Modeled networks are becoming more complex, and reconstructing them from the beginning in an exchangeable and reproducible manner is challenging. Using precisely defined ontologies enables the encoding of field-specific knowledge and the association of disparate data types. In computational modeling, the medium for representing domain knowledge is the set of orthogonal structured controlled vocabularies named Systems Biology Ontology ( SBO). The SBO terms enable modelers to explicitly define and unambiguously describe model entities, including their roles and characteristics. Here, we present the first standalone tool that automatically assigns SBO terms to multiple entities of a given SBML model, named the SBOannotator. The main focus lies on the reactions, as the correct assignment of precise SBO annotations requires their extensive classification. Our implementation does not consider only top-level terms but examines the functionality of the underlying enzymes to allocate precise and highly specific ontology terms to biochemical reactions. Transport reactions are examined separately and are classified based on the mechanism of molecule transport. Pseudo-reactions that serve modeling purposes are given reasonable terms to distinguish between biomass production and the import or export of metabolites. Finally, other model entities, such as metabolites and genes, are annotated with appropriate terms. Including SBO annotations in the models will enhance the reproducibility, usability, and analysis of biochemical networks. Availability: The open-source project SBOannotator is freely available under the terms of LGPL version 3.0 from https://github.com/draeger-lab/SBOannotator/.

The article is aimed at a brief comparison and analysis of the results of queries to IEEE Xplore and the leading abstract databases Scopus and Web of Science to identify research trends. Some errors in the Author Keywords in Web of Science have been revealed. Therefore, a more detailed analysis was conducted by comparing different types of key terms for IEEE Xplore and Scopus platforms only. I used IEEE Access journal metadata as indexed on both platforms. The sample match for IEEE Xplore and Scopus was achieved by comparing DOI. The IEEE Xplore metadata contains more types of key terms, which provides an advantage in analyzing research trends. Using NSPEC Controlled Terms from expert-compiled vocabulary provides a more stable data, which gives an advantage when considering the change of terms over time. Apriori, an algorithm for finding association rules, has been used to compare co-occurrence of terms for a more detailed description of sample subjects on both platforms. VOSviewer was used to analyze trends in scientific research based on IEEE Xplore data. The 2011-2021 ten-year period was divided into two sub-intervals for comparing the occurrence of Author Keywords, IEEE Terms, and NSPEC Controlled Terms. Using the IEEE conference proceedings bibliometric data, I illustrated the importance of context in estimating the rate of growth of publishing activity on a topic of interest.

The shallow water equations are widely applied for the simulation of flow routing in rivers and floodplains, as well as for flood inundation mapping. From a mathematical point of view, they are a hyperbolic system of nonlinear partial differential equations, whose numerical integration is sometimes computationally burdensome. For this reason, the interest of many researchers has been focused on the study of simplified forms of the original set of equations, which requires less computational effort. One of the most commonly applied simplifications consists in neglecting the inertial terms, which changes the hyperbolic model to a parabolic one. The effects of such a choice on the outputs of the simulations of flooding events are controversial and an important topic of debate. In the present paper, two numerical models, recently proposed for the solution of the complete and zero-inertia forms of the shallow waters equations, are applied to several unsteady flow routing scenarios. We simulate synthetic and laboratory studies, starting from very simple geometries and moving towards complex topographies. Analyzing the role of the terms in the momentum equations, we try to understand the effect, on the computed results, of neglecting the inertial terms in the zero-inertia formulation. We analyze the computational costs.

This paper presents a computational approach designed to construct and query a literature-based knowledge graph for predicting novel drug therapeutics. The main objective is to offer a platform that discovers drug combinations from FDA-approved drugs and accelerates their investigations by domain scientists. Specifically, the paper introduced the following algorithms: (1) an algorithm for constructing the knowledge graph from drug, gene, and disease mentions in the biomedical literature; (2) an algorithm for vetting the knowledge graph from drug combinations that may pose a risk of drug interaction; (3) and two querying algorithms for searching the knowledge graph by a single drug or a combination of drugs. The resulting knowledge graph had 844 drugs, 306 gene/protein features, and 19 disease mentions. The original number of drug combinations generated was 2,001. We queried the knowledge graph to eliminate noise generated from chemicals that are not drugs. This step resulted in 614 drug combinations. When vetting the knowledge graph to eliminate the potentially risky drug combinations, it resulted in predicting 200 combinations. Our domain expert manually eliminated extra 54 combinations which left only 146 combination candidates. Our three-layered knowledge graph, empowered by our algorithms, offered a tool that predicted drug combination therapeutics for scientists who can further investigate from the viewpoint of drug targets and side effects.

In our previous papers [1,3], using only the concepts of the zero-point energy and quantized space–times, all the fields including gravity were explained. However, the previous papers had the following limitations: First, the concept of the quantized space-time must be experimentally confirmed. Second, we should clarify the meaning of the quantized Einstein’s gravity equation, which is derived in [1]. Moreover, in another paper [2], we succeeded in describing the neutrinos’ self-energy and their oscillations. However, this paper assumes the rest energy of 3-leptons in advance, which is why we needed to uncover the reason why leptons have 3-generations. As mentioned, using the concepts of the zero-point energy and quantized space–times, we derived the quantized Einstein’s gravity equation in our previous paper [1]. The paper provides an analytical solution of this equalized Einstein’s equation, which implies the conservation of angular momentum in terms of quantized space–times. Employing this solution and without the standard big bang model, a unique form of acceleration equation for the acceleration-expansion universe is derived. Moreover, the temperature of the cosmic microwave background (CMB) emission is also obtained. Further, this solution results in an analytical (not numerical) derivation of the gravity wave. Moreover, based on the configuration of quantized space–times in terms of both electric and magnetic fields, we analytically attempted to calculate every equation in terms of electromagnetic and gravity fields, using the solution of the quantized Einstein’s gravity equation. As a result of this theory, first the calculated acceleration and temperature of CMB emission agree with the measurements. Furthermore, the analytical solution of the quantized Einstein’s gravity equation resulted in all the laws of electromagnetic and gravity fields in addition to the analytically derived gravity wave, which agrees well with the recent measurements. Moreover, the calculations of the energies in the basic configuration of the quantized space–times resulted in all 3-leptons’ rest energies. Considering this basic configuration is uniformly distributed everywhere in the universe, we can conclude that τ-particles or static magnetic field energy derived from the basic configuration of the quantized space–times is the identity of dark energy, which also distributes uniformly in the universe.

This paper aims to provide the smart grid research community with an open and accessible general mathematical framework to develop and implement optimal flexibility mechanisms in large-scale network applications. The motivation of this paper is twofold. On the one hand, flexibility mechanisms are currently a hot topic of research, which is aimed to mitigate variation and uncertainty of electricity demand and supply in decentralised grids with a high aggregated share of renewables. On the other hand, a large part of such related research is performed by heuristic methods, which are generally inefficient (such methods do not guarantee optimality) and difficult to extrapolate for different use cases. Alternatively, this paper presents an MPC-based (Model Predictive Control) framework explicitly including a generic flexibility mechanism which is easy to particularise to specific strategies such as Demand Response, Flexible Production and Energy Efficiency Services. The proposed framework is benchmarked with other non-optimal control configurations to better show the advantages it provides. The work of this paper is completed by the implementation of a generic use case which aims to further clarify the use of the framework and thus, to ease its adoption by other researchers in their specific flexibility mechanisms applications.

The antimicrobial properties of the new strains of microorganisms isolated from natural sources of various ecological niches in the Moscow Region and the Republic of Tatarstan were studied. An antifungal activity of isolates was established in a test culture of toxin-producing microscopic fungi that cause various plant diseases: Fusarium oxysporum, Aspergillus flavus, Penicillium spp. and Candida albicans. Of the 46 studied microorganisms, 4 isolates (Bacillus subtilis, Propionibacterium freudenreichii, Lactobacillus plantarum and Streptomyces spp.) showed an ability to produce biologically active metabolites with a pronounced antimicrobial potential. This is promising in the growth and protection of the Scots pine, pedunculate oak and small-leaved linden forest crops from diseases caused by fungi Lophodermium pinastri Chev. and Microsphaera alphitoides stimulation. Based on selected isolates, a Bacterial product LRV composition has been developed. A Scots pine, pedunculate oak and small-leaved linden seedlings single and double foliar treatment with Bacterial product LRV at a concentration of 10 ml/l led to an increase in the growth of an above-ground part by 31.8, 51.9 and 25.4 %, respectively, and an underground part – by 25.0, 37.2 and 25.7 %, respectively, compared with the control. The weight of seedling at the end of the study exceeded the control variant by an average of 26.0, 44.0 and 78.0 %, respectively. A use of a plant protection Bacterial product LRV did not have a significant effect on a powdery mildew and Schütte disease damage to forest crops. A Biogeosystem Technique methodology has been developed to improve a long-term forest growing.

Applying a procedure similar to that of E.S. Bring, by using a 4^th degree Tschirnhaus transformation, it was possible to transform the Bring-Jerrard normal quintic (BJQ) equation into a De Moivre form (DMQ), so that it could be solved by radicals. The general solution by radicals of the De Moivre equations of any degree is presented. By the same procedure the BJSx (normal sextic) equation was taken to another one without the 2^nd, 4^th and 6^th terms which was transformed into a cubic (solvable) equation. By applying a 6^th degree Tschirnhaus transformation to the BJSp (normal septic) equation its binormal (without the 2^nd, 3^rd, 4^th and 5^th terms) form was obtained.

Applying a procedure similar to that of E.S. Bring, by using a 4^th degree Tschirnhaus transformation, it was possible to transform the Bring-Jerrard normal quintic (BJQ) equation into a De Moivre form (DMQ), so that it could be solved by radicals. The general solution by radicals of the De Moivre equations of any degree is presented. By the same procedure the BJSx (normal sextic) equation was taken to another one without the 2^nd, 4^th and 6^th terms which was transformed into a cubic (solvable) equation. By applying a 6^th degree Tschirnhaus transformation to the BJSp (normal septic) equation its Bring-Jerrard binormal (without the 2^nd, 3^rd, 4^th and 5^th terms) form was obtained.

This paper explores the Wilsonian renormalization group of probe-D-branes, focusing on the Dirac-Born-Infeld (DBI) action. The analysis involves deriving the constant of motion and formulating the Wilsonian renormalization group equation. The study extends to the infrared regime, considering both zero and non-zero temperatures. Additionally, thermodynamic aspects related to the functional form of the grand potential are discussed. The investigation provides insights into the renormalization of probe-D-branes and their thermodynamic properties.

Applying a procedure similar to that of E.S. Bring, by using a 4^th degree Tschirnhaus transformation, it was possible to transform the Bring-Jerrard normal quintic (BJQ) equation into a De Moivre form (DMQ), so that it could be solved by radicals. The general solution by radicals of the De Moivre equations of any degree is presented. By the same procedure the BJSx (normal sextic) equation was taken to another one without the 2^nd, 4^th and 6^th terms which was transformed into a cubic (solvable) equation. By applying a 6^th degree Tschirnhaus transformation to the BJSp (normal septic) equation its binormal (without the 2^nd, 3^rd, 4^th and 5^th terms) form was obtained.

Applying a procedure similar to that of E.S. Bring, by using a 4^th degree Tschirnhaus transformation, it was possible to transform the Bring-Jerrard normal quintic (BJQ) equation into a De Moivre form (DMQ), so that it could be solved by radicals. The general solution by radicals of the De Moivre equations of any degree is presented. By the same procedure the BJSx (normal sextic) equation was taken to another one without the 2^nd, 4^th and 6^th terms which was transformed into a cubic (solvable) equation. By applying a 6^th degree Tschirnhaus transformation to the BJSp (normal septic) equation its binormal (without the 2^nd, 3^rd, 4^th and 5^th terms) form was obtained.