The holistic approach of One Health, which sees human, animal, plant, and environmental health as a unit, rather than discrete parts, requires not only interdisciplinary cooperation, but standardized methods for communicating and archiving data, enabling participants to easily share what they have learned and allow others to build upon their findings.Ongoing work by NCBI and the GenomeTrakr project illustrates how open data platforms can help meet the needs of federal and state regulators, public health laboratories, departments of agriculture, and universities. Here we describe how microbial pathogen surveillance can be transformed by having an open access database along with Best Practices for contributors to follow. First, we describe the open pathogen surveillance framework, hosted on the NCBI platform. We cover the current community standards for WGS quality, provide an SOP for assessing your own sequence quality and recommend QC thresholds for all submitters to follow. We then provide an overview of NCBI data submission along with step by step details. And finally, we provide curation guidance and an SOP for keeping your public data current within the database. These Best Practices can be models for other open data projects, thereby advancing the One Health goals of Findable, Accessible, Interoperable and Re-usable (FAIR) data.

Seismic imaging is the main technology used for subsurface hydrocarbon prospection. It~provides an image of the subsurface using the same principles as ultrasound medical imaging. As for any data acquired through hydrophones (pressure sensors) and/or geophones (velocity/acceleration sensors), the raw seismic data are heavily contaminated with noise and unwanted reflections that need to be removed before further processing. Therefore, the noise attenuation is done at an early stage and often while acquiring the data. Quality control (QC) is mandatory to give confidence in the denoising process and to ensure that a costly data re-acquisition is not needed. QC is done manually by humans and comprises a major portion of the cost of a typical seismic processing project. It is therefore advantageous to automate this process to improve cost and efficiency. Here, we propose a supervised learning approach to build an automatic QC system. The~QC system is an attribute-based classifier that is trained to classify three types of filtering (mild = under filtering, noise remaining in the data; optimal = good filtering; harsh = over filtering, the signal is distorted). The attributes are computed from the data and represent geophysical and statistical measures of the quality of the filtering. The system is tested on a full-scale survey (9000 km²) to QC the results of the swell noise attenuation process in marine seismic data.

Seismic imaging is the main technology used for subsurface hydrocarbon prospection. It provides an image of the subsurface using the same principles as ultrasound medical imaging. It is based on emitting a sound (pressure) wave through the subsurface and recording the reflected echoes using hydrophones (pressure sensors) and/or geophones (velocity/acceleration sensors). Contrary to medical imaging, which is done in real time, subsurface seismic imaging is an offline process that involves a huge volume of data and needs considerable computing power. The raw seismic data are heavily contaminated with noise and unwanted reflections that need to be removed before further processing. Therefore, the noise attenuation is done at an early stage and often while acquiring the data. Quality control (QC) is mandatory to give confidence in the denoising process and to ensure that a costly data re-acquisition is not needed. QC is done manually by humans and comprises a major portion of the cost of a typical seismic processing project. It is therefore advantageous to automate this process to improve cost and efficiency. Here, we propose a supervised learning approach to build an automatic QC system. The QC system is an attribute-based classifier that is trained to classify three types of filtering (mild = underfiltering, noise remaining in the data; optimal = good filtering; harsh = overfiltering, the signal is distorted). The attributes are computed from the data and represent geophysical and statistical measures of the quality of the filtering. The system is tested on a full-scale survey (9000 km2) to QC the results of the swell noise attenuation process in marine seismic data. The results are encouraging and helped identify localized issues that were difficult for a human to spot.

This paper aims to introduce the notions of various types of Qc-contractions for which we establish some fixed circle and fixed disc theorems in the setting of metric spaces. Some illustrative examples are also provided to support our results. Moreover, we present some fixed circle and fixed disc results of integral type contractive self-mappings.

Pipeline conflicts arising from data dependencies are a common issue encountered in the hardware implementation of layered QC-LDPC decoders. This paper proposes an efficient layered decoding architecture to reduce pipeline conflicts without introducing stall cycles, by reordering the processing order offline and using the patch method based on variable-to-check message. The experimental results on the LDPC code of the IEEE802.16 standard in the OFDM-PON system demonstrate that the proposed architecture has a sensitivity improvement of 0.125 dBm and 0.375 dBm, respectively, compared with our previous work and the method described in the other work.

Mycobacteria can be one of the main contaminants of biological products, and their presence can have serious consequences on patients’ health. Thus, specific testing is necessitated by regulations such as the European Pharmacopoeia. The current pharmacopeial reference i.e., microbial culture method cannot ensure an exhaustive detection of mycobacteria due to their growth characteristics. Additionally, the method is time-consuming and requires a continuous supply of culture media, which could be further challenging. Thus, to overcome these challenges, pharmaceutical industries need to consider alternative non-microbiological techniques to detect these fastidious, slow-growing contaminating agents. This review provides an overview of alternative methods, which could be applied within a quality control environment of biological products, and underlines advantages and limitations of these methods. Nucleic acid amplification techniques or direct measurement of mycobacteria stands out as the most suitable alternatives for mycobacterial testing in biological products.

Durability monitoring of insecticide-treated nets (ITNs) containing a pyrethroid in combination with a second active ingredient (AI) must be adapted so that the insecticidal bioefficacy of each AI can be monitored independently. An effective way to do this is to measure rapid knock down of a pyrethroid-susceptible strain of mosquitoes to assess the bioefficacy of the pyrethroid component and to use a pyrethroid-resistant strain to measure the bioefficacy of the second ingredient. To allow robust comparison of results across tests within and between test facilities, and over time, protocols for bioefficacy testing must include either characterisation of the resistant strain, standardisation of the mosquitoes used for bioassays, or a combination of the two. Through a series of virtual meetings, key stakeholders and practitioners explored different approaches to achieving these goals. Via an iterative process we decided on the preferred approach and produced a protocol consisting of characterising mosquitoes used for bioefficacy testing before and after a round of bioassays, for example at each time point in a durability monitoring study. We present the final protocol and justify our approach to establishing a standard methodology for durability monitoring of ITNs containing pyrethroid and a second AI.