The Atlantic Goliath Grouper Epinephelus itajara (Lichtenstein, 1822) is thought to occur on both sides of the Atlantic, from the Carolinas (USA) to Brazil in the western Atlantic, and from North Senegal to North Angola off West Africa in the eastern Atlantic. While there are fairly good data on their distribution in the western Atlantic, genetic verification of species status, confirmed occurrences, population status, fishing reports, and trade data are almost non-existent off West Africa. Part of the problem is that tropical West African countries lack a network of marine reserves that might protect this species. Add to this destruction of mangrove forests and other coastal habitats on which the species depends when in the post-larval and juvenile stages coupled heavy pollution and intense overfishing and it becomes clear that their survival is deeply threatened. The focus of this paper is to describe all of the known historical data and examine all current data to better evaluate their present status.

Interferon regulatory factor 5 (IRF5) is known to be involved in the innate immune response and pro-inflammatory cytokines. However, the roles of IRF5 in immune responses in Malabar grouper (Epinephelus malabaricus) have not been extensively explored. In this study, IRF5 gene was identified and characterized from M. grouper. The full-length IRF5 cDNA consisted of a 5’ terminal untranslated region (5’-UTR) of 289 bp and a 3’-UTR of 542 bp, an open reading frame (ORF) of 1500 bp encoding a polypeptide of 499 amino acids with a predicted molecular mass of 56.28 kDa and isoelectric point (pI) of 5.2. The putative MgIRF5 protein consists of four important conserved domains: a helix DNA-binding domain (DBD) at the N-terminus, a middle region, an IRF association domain (IAD) and a virus activated domain (VAD) at the C-terminus. Sequence alignment and phylogenetic analysis showed that highest sequence similarity of IRF5 was observed between the IRF5 genes from Oplegnathus fasciatus and Miichthys miiuy. The mRNA transcripts of IRF5 were detected in a wide range of tissues types from healthy M. grouper with highest expression in muscle, liver and skin. After treatment with poly (I: C), it was significantly up-regulated in spleen and liver tissues. When infected with NNV, the expression level of MgIRF5 was up-regulated in spleen and head kidney and their transcriptional responses to IRF5 increased in the grouper kidney cells. This approach suggests that MgIRF5 is important in the underlying mechanism of the innate immune responses against antiviral response.