Table S3. Lists of functions from GO analysis of proteins containing WD40

located in histone deacetylase complex
located in nuclear pore
part of CAF-1 complex
part of CIA complex
part of COPI vesicle coat
part of COPII vesicle coat
part of Cdc73/Paf1 complex
part of Cul4-RING E3 ubiquitin ligase complex
part of Cul4A-RING E3 ubiquitin ligase complex
part of ESC/E(Z) complex
part of Prp19 complex
part of Pwp2p-containing subcomplex of 90S preribosome
part of Rix1 complex
part of SMN complex
part of Set1C/COMPASS complex
part of THO complex
part of TORC1 complex
part of TORC2 complex
part of U2-type catalytic step 1 spliceosome
part of anaphase-promoting complex
part of bub1-bub3 complex
part of catalytic step 2 spliceosome
part of chromatin silencing complex
part of eukaryotic translation initiation factor 3
part of heterotrimeric G-protein complex
part of histone deacetylase complex
part of katanin complex
part of mRNA cleavage and polyadenylation specificity
part of mRNA cleavage stimulating factor complex
part of membrane coatlocated in nuclear pore
part of mitotic checkpoint complex
part of nuclear pore
part of nuclear pore outer ring
part of nuclear pre-replicative complex
part of nuclear ubiquitin ligase complex
part of nucleotide-excision repair complex
part of precatalytic spliceosome
part of protein phosphatase type 2A complex
part of protein-containing complex
part of small-subunit processome
part of transcription export complex
part of transcription factor TFIID complex
enables chromatin binding
acts upstream of or
contributes to DNA-binding transcription
contributes to GTPase activator
contributes to GTPase activity
contributes to RNA binding
contributes to damaged DNA
contributes to guanyl-nucleotide exchange
contributes to translation initiation
contributes to ubiquitin-protein transferase
enables ATP binding 
enables DNA binding 
enables DNA-binding transcription factor
enables GTPase activator activity
enables GTPase activity 
enables MAP-kinase scaffold activity
enables RNA binding 
enables anaphase-promoting complex binding
enables chromatin binding 
enables damaged DNA binding
enables guanyl-nucleotide exchange factor
enables histone binding
enables identical protein binding
enables kinase binding 
enables mRNA binding 
enables metal ion binding
enables molecular_function 
enables peroxisome matrix targeting
enables phosphatidylinositol-3,5-bisphosphate binding 
enables phosphatidylinositol-3-phosphate binding
enables protein binding 
enables protein heterodimerization activity
enables protein homodimerization activity
enables protein kinase C
enables protein kinase activity
enables protein phosphatase regulator
enables ribosome binding 
enables signaling receptor complex
enables structural molecule activity
enables transcription cis-regulatory region
enables transcription coactivator activity
enables transcription corepressor activity
enables translation initiation factor
enables translation regulator activity
enables ubiquitin binding 
enables ubiquitin ligase activator
enables ubiquitin protein ligase
enables ubiquitin-protein transferase activity
located in nucleus 

