Phylum Class Order Species Reads Other sequencing methods Assembly size (Mb) Contig N50 (kb) Scaffold N50 (kb) Year Journal DOI Cnidaria Anthozoa Scleractinia Acropora millepora Illumina mate-pair 387 37 495 2019 Genome Biology and Evolution https://doi.org/10.1093/gbe/evz077 Cnidaria Anthozoa Scleractinia Acropora millepora Illumina, PacBio linked reads, genetic map 475 1091 19841 2020 Science https://doi.org/10.1126/science.aba4674 Cnidaria Anthozoa Scleractinia Acropora digitifera 454, Illumina mate-pair 447 11 484 2011 Nature https://doi.org/10.1038/nature10249 Cnidaria Anthozoa Scleractinia Montipora capitata Illumina linked reads 615 24 186 2019 Genome Biology and Evolution https://doi.org/10.1093/gbe/evz135 Cnidaria Anthozoa Scleractinia Stylophora pistillata Illumina mate-pair 400 21 457 2017 Scientific Reports https://doi.org/10.1038/s41598-017-17484-x Cnidaria Anthozoa Scleractinia Pocillopora damicornis Illumina Hi-C 234 26 326 2018 Scientific Reports https://doi.org/10.1038/s41598-018-34459-8 Cnidaria Anthozoa Scleractinia Orbicella faveolata Illumina mate-pair 488 4 70 2016 Current Biology https://doi.org/10.1016/j.cub.2016.09.039 Cnidaria Anthozoa Actiniaria Nematostella vectensis Sanger None 357 20 473 2007 Science https://doi.org/10.1126/science.1139158 Cnidaria Anthozoa Actiniaria Actinia tenebrosa Illumina mate-pair 238 13 189 2019 Ecology and Evolution https://doi.org/10.1002/ece3.5633 Cnidaria Anthozoa Actiniaria Actinia equina PacBio None 409 493 493 2020 Marine Genomics https://doi.org/10.1016/j.margen.2020.100753 Cnidaria Anthozoa Actinaria Exaiptasia pallida Illumina mate-pair 256 14 442 2015 PNAS https://doi.org/10.1073/pnas.1513318112 Cnidaria Anthozoa Alcyonacea Dendronephthya gigantea Illumina, PacBio None 286 1446 1446 2019 Genome Biology and Evolution https://doi.org/10.1093/gbe/evz043 Cnidaria Hydrozoa Leptothecata Clytia hemisphaerica 454, Illumina mate-pair 421 377 1183 2019 Nature Ecology and Evolution https://doi.org/10.1038/s41559-019-0833-2 Cnidaria Hydrozoa Anthoathecata Hydra vulgaris Sanger None 1260 13 65 2010 Nature https://doi.org/10.1038/nature08830 Cnidaria Hydrozoa Anthoathecata Hydra vulgaris Sanger None 852 10 96 2010 Nature https://doi.org/10.1038/nature08830 Cnidaria Hydrozoa Anthoathecata Hydra viridissima Illumina mate-pair 284 20 1080 2020 G3: Genes, Genomes, Genetics https://doi.org/10.1534/g3.120.401411 Cnidaria Hydrozoa Anthoathecata Hydra viridissima Illumina None 299 11 12 2019 Nature Communications https://doi.org/10.1038/s41467-018-08242-2 Cnidaria Hydrozoa Anthoathecata Hydra oligactis Illumina None 1262 5 5 2019 Nature Communications https://doi.org/10.1038/s41467-018-08242-2 Cnidaria Staurozoa Stauromedusae Calvadosia cruxmelitensis Illumina mate-pair 209 12 16 2019 GigaScience https://doi.org/10.1093/gigascience/giz069 Cnidaria Scyphozoa Rhizostomeae Cassiopea xamachana Illumina None 393 13 16 2019 GigaScience https://doi.org/10.1093/gigascience/giz069 Cnidaria Cubozoa Carybdeida Alatina alata Illumina, Pacbio None 1075 8 8 2019 GigaScience https://doi.org/10.1093/gigascience/giz069 Cnidaria Cubozoa Carybdeida Morbakka virulenta Illumina mate-pair 952 31 2174 2019 Nature Ecology and Evolution https://doi.org/10.1038/s41559-019-0853-y Cnidaria Scyphozoa Semaeostomeae Aurelia aurita (Roscoff) Illumina mate-pair 426 12 181 2019 Nature Ecology and Evolution https://doi.org/10.1038/s41559-019-0853-y Cnidaria Scyphozoa Semaeostomeae Aurelia aurita (Atlantic) Illumina mate-pair 377 34 1043 2019 Nature Ecology and Evolution https://doi.org/10.1038/s41559-019-0853-y Cnidaria Scyphozoa Rhizostomeae Rhopilema esculentum Illumina, Pacbio Hi-C 257 196 12930 2020 GigaScience https://doi.org/10.1093/gigascience/giaa036 Cnidaria Scyphozoa Rhizostomeae Nemopilema nomurai Illumina, Pacbio mate-pair 214 849 2711 2019 BMC Biology https://doi.org/10.1186/s12915-019-0643-7 Cnidaria Scyphozoa Rhizostomeae Rhopilema esculentum Illumina, Pacbio Hi-C 257 196 12930 2020 Nature Communication https://doi.org/10.1038/s41467-020-16801-9 Cnidaria Scyphozoa Semaeostomeae Sanderia malayensis Illumina, Pacbio Hi-C 184 411 4676 2020 Nature Communication https://doi.org/10.1038/s41467-020-16801-9 Cnidaria Myxozoa Bivalvulida Myxobolus squamalis Illumina None 44 1 1 2020 PNAS https://doi.org/10.1073/pnas.1909907117 Cnidaria Myxozoa Bivalvulida Henneguya salminicola Illumina None 61 8 8 2020 PNAS https://doi.org/10.1073/pnas.1909907117 Cnidaria Myxozoa Bivalvulida Thelohanellus kitauei 454, Illumina mate-pair 150 13 150 2014 Genome Biology and Evolution https://doi.org/10.1093/gbe/evu247 Cnidaria Myxozoa Multivalvulida Kudoa iwatai Illumina None 31 40 40 2015 PNAS https://doi.org/10.1073/pnas.1511468112 Cnidaria Myxozoa Multivalvulida Kudoa iwatai Illumina None 22 6 6 2015 PNAS https://doi.org/10.1073/pnas.1511468112 Cnidaria Myxozoa Bivalvulida Sphaeromyxa zaharoni Illumina None 174 4 4 2015 PNAS https://doi.org/10.1073/pnas.1511468112 Cnidaria Myxozoa Bivalvulida Enteromyxum leei Illumina None 68 1 1 2015 PNAS https://doi.org/10.1073/pnas.1511468112 Placozoa - - Trichoplax adhaerens Sanger None 106 204 5979 2008 Nature https://doi.org/10.1038/nature07191 Rotifera Bdelloidea Adinetida Adineta vaga 454, Illumina mate-pair 218 95 260 2013 Nature https://doi.org/10.1038/nature12326 Rotifera Bdelloidea Adinetida Adineta ricciae Illumina, PacBio mate-pair 174 58 277 2018 PLoS Biology https://doi.org/10.1371/journal.pbio.2004830 Rotifera Bdelloidea - Rotaria macrura Illumina mate-pair 235 56 73 2018 PLoS Biology https://doi.org/10.1371/journal.pbio.2004830 Rotifera Bdelloidea - Rotaria magnacalcarata Illumina None 180 24 53 2018 PLoS Biology https://doi.org/10.1371/journal.pbio.2004830 Rotifera Monogononta Ploima Brachionus plicatilis Illumina mate-pair 107 56 1157 2019 Aquatic Toxicology https://doi.org/10.1016/j.aquatox.2019.105230 Rotifera Monogononta Ploima Brachionus plicatilis Illumina None 108 12 20 2018 Scientific Reports https://doi.org/10.1038/s41598-018-34188-y Rotifera Monogononta Ploima Brachionus calyciflorus Illumina mate-pair 130 27 786 2018 Molecular Ecology Resources https://doi.org/10.1111/1755-0998.12768 Hemichordata Enteropneusta - Ptychodera flava Sanger, 454, Illumina mate-pair 1229 13 196 2015 Nature https://doi.org/10.1038/nature16150 Echinodermata Asteroidea Valvatida Acanthaster planci Illumina mate-pair 384 50 1521 2014 Genesis https://doi.org/10.1002/dvg.22840 Echinodermata Asteroidea Forcipulatida Pisaster ochraceus Illumina Hi-C 402 7 20188 2020 Molecular Ecology https://doi.org/10.1111/mec.15386 Echinodermata Holothuroidea Aspidochirotida Apostichopus japonicus Illumina mate-pair 664 5 133 2017 GigaScience https://doi.org/10.1093/gigascience/giw006 Echinodermata Holothuroidea Aspidochirotida Apostichopus japonicus Illumina, PacBio mate-pair 805 307 487 2018 Adineta vaga https://doi.org/10.1371/journal.pbio.2003790 Echinodermata Echinoidea Echinoida Hemicentrotus pulcherrimus Illumina mate-pair 569 10 143 2018 Development, Growth & Differentiation https://doi.org/10.1111/dgd.12429 Echinodermata Holothuroidea Aspidochirotida Parastichopus parvimensis Illumina None 873 10 89 2018 PLoS Biology https://doi.org/10.1371/journal.pbio.2003790 Echinodermata Asteroidea Valvatida Patiria miniata 454, Illumina None 811 9 53 2009 Nucleic Acids Research https://doi.org/10.1093/nar/gkn887 Echinodermata Asteroidea Valvatida Patiria miniata PacBio Hi-C 608 2103 23094 2020 ? Nematoda Chromadorea Rhabditida Setaria digitata Illumina None 90 25 25 2020 Genome Biology and Evolution https://doi.org/10.1093/gbe/evaa017 Nematoda Chromadorea Rhabditida Caenorhabditis briggsae Sanger None 108 45 728 2014 PLoS Biology https://doi.org/10.1371/journal.pbio.0000045 Nematoda Chromadorea Rhabditida Caenorhabditis bovis Illumina, Nanopore None 63 7557 7557 2020 Current Biology https://doi.org/10.1016/j.cub.2020.01.074 Nematoda Chromadorea Rhabditida Caenorhabditis elegans PacBio None 103 2787 17985 2019 ? Nematoda Chromadorea Rhabditida Caenorhabditis elegans Nanopore None 103 2159 2159 2020 ? Nematoda Chromadorea Rhabditida Caenorhabditis remanei Sanger None 145 31 435 2007 Trends in Genetics https://doi.org/10.1016/j.tig.2007.01.002 Nematoda Chromadorea Rhabditida Caenorhabditis remanei Illumina, PacBio Hi-C 130 4042 21502 2020 Genetics https://doi.org/10.1534/genetics.119.303018 Nematoda Chromadorea Rhabditida Caenorhabditis remanei Illumina mate-pair 125 48 1766 2017 ? Nematoda Chromadorea Rhabditida Ascaris suum Illumina mate-pair 269 22 413 2011 Nature https://doi.org/10.1038/nature10553 Nematoda Chromadorea Rhabditida Ascaris suum Illumina, PacBio mate-pair, optical mapping 298 289 4646 2017 Genome Research https://doi.org/10.1101/gr.225730.117 Nematoda Chromadorea Rhabditida Ascaris suum Illumina, PacBio mate-pair, optical mapping 280 277 4560 2017 Genome Research https://doi.org/10.1101/gr.225730.117 Nematoda Chromadorea Rhabditida Ascaris suum PacBio Hi-C 279 6437 12191 2020 Current Biology https://doi.org/10.1016/j.cub.2020.06.058 Nematoda Chromadorea Rhabditida Parascaris univalens Illumina, PacBio mate-pair, optical mapping 253 379 1826 2017 Genome Research https://doi.org/10.1101/gr.225730.117 Nematoda Chromadorea Rhabditida Parascaris univalens Illumina, PacBio mate-pair, optical mapping 243 410 1879 2017 Genome Research https://doi.org/10.1101/gr.225730.117 Nematoda Chromadorea Rhabditida Brugia malayi Sanger None 96 19 38 2007 Science https://doi.org/10.1126/science.1145406 Nematoda Chromadorea Rhabditida Bursaphelenchus xylophilus 454, Illumina mate-pair 73 18 18 2011 PLoS Pathogens https://doi.org/10.1371/journal.ppat.1002219 Nematoda Chromadorea Rhabditida Dirofilaria immitis Illumina mate-pair 85 15 15 2012 FASEB Journal https://doi.org/10.1096/fj.12-205096 Nematoda Chromadorea Rhabditida Dirofilaria immitis Illumina, PacBio None 84 124 126 2020 ? Nematoda Chromadorea Rhabditida Dirofilaria immitis PacBio None 89 284 284 2020 ? Nematoda Chromadorea Rhabditida Globodera pallida 454, Illumina mate-pair 124 12 120 2014 Genome Biology https://doi.org/10.1186/gb-2014-15-3-r43 Nematoda Chromadorea Rhabditida Heterodera glycines Illumina, PacBio None 124 304 304 2019 BMC Genomics https://doi.org/10.1186/s12864-019-5485-8 Nematoda Chromadorea Rhabditida Heterodera glycines Illumina, PacBio linked reads, Hi-C 141 331 16266 2019 Molecular Ecology Resources https://doi.org/10.1111/1755-0998.13068 Nematoda Chromadorea Rhabditida Loa loa 454 None 91 14 174 2013 Nature Genetics https://doi.org/10.1038/ng.2585 Nematoda Chromadorea Rhabditida Wuchereria bancrofti 454 None 82 5 5 2013 Nature Genetics https://doi.org/10.1038/ng.2585 Nematoda Chromadorea Rhabditida Wuchereria bancrofti PacBio None 88 250 12369 2019 Molecular Biology and Evolution https://doi.org/10.1093/molbev/msz116 Nematoda Chromadorea Rhabditida Onchocerca volvulus Illumina mate-pair, optical mapping 96 577 25486 2016 Nature Microbiology https://doi.org/10.1038/nmicrobiol.2016.216 Nematoda Chromadorea Rhabditida Meloidogyne hapla Sanger None 53 38 38 2008 PNAS https://doi.org/10.1073/pnas.0805946105 Nematoda Chromadorea Rhabditida Meloidogyne incognita Sanger None 82 13 13 2008 Nature Biotechnology https://doi.org/10.1038/nbt.1482 Nematoda Chromadorea Rhabditida Meloidogyne incognita PacBio None 193 975 975 2020 Molecular Plant Pathology https://doi.org/10.1111/mpp.12961 Nematoda Chromadorea Rhabditida Meloidogyne incognita Illumina None 122 10 17 2017 Genome Biology and Evolution https://doi.org/10.1093/gbe/evx201 Nematoda Chromadorea Rhabditida Meloidogyne javanica Illumina None 150 12 14 2017 Genome Biology and Evolution https://doi.org/10.1093/gbe/evx201 Nematoda Chromadorea Rhabditida Meloidogyne floridensis Illumina None 75 8 13 2017 Genome Biology and Evolution https://doi.org/10.1093/gbe/evx201 Nematoda Chromadorea Rhabditida Meloidogyne enterolobii Illumina None 163 9 11 2017 Genome Biology and Evolution https://doi.org/10.1093/gbe/evx201 Nematoda Chromadorea Rhabditida Meloidogyne enterolobii Illumina, PacBio mate-pair 240 143 143 2020 Scientific data https://doi.org/10.1038/s41597-020-00666-0 Nematoda Chromadorea Rhabditida Meloidogyne arenaria Illumina None 164 9 11 2017 Genome Biology and Evolution https://doi.org/10.1093/gbe/evx201 Nematoda Chromadorea Rhabditida Meloidogyne arenaria PacBio None 284 205 205 2018 American Society for Microbiology https://doi.org/10.1128/genomeA.00519-18 Nematoda Chromadorea Rhabditida Meloidogyne chitwoodi PacBio None 47 2318 2318 2020 ? Nematoda Chromadorea Rhabditida Meloidogyne chitwoodi PacBio None 48 2363 2363 2020 ? Nematoda Chromadorea Rhabditida Meloidogyne chitwoodi PacBio None 47 2451 2451 2020 ? Nematoda Chromadorea Rhabditida Meloidogyne graminicola Illumina, Nanopore None 42 295 295 2020 Ecology and Evolution https://doi.org/10.1002/ece3.6680 Nematoda Chromadorea Rhabditida Meloidogyne luci Illumina, PacBio None 209 1712 1712 2020 Journal of Nematology https://doi.org/10.21307/jofnem-2020-025 Nematoda Chromadorea Rhabditida Pristionchus pacificus Sanger None 134 19 19 2008 Nature Genetics https://doi.org/10.1038/ng.227 Nematoda Chromadorea Rhabditida Pristionchus pacificus PacBio genetic map 155 4619 4619 2017 Cell Reports https://doi.org/10.1016/j.celrep.2017.09.077 Nematoda Chromadorea Rhabditida Steinernema carpocapsae Illumina, PacBio optical mapping 85 4210 7362 2019 G3: Genes, Genomes, Genetics https://doi.org/10.1534/g3.119.400180 Nematoda Chromadorea Strongylida Ancylostoma ceylanicum Illumina mate-pair 313 25 668 2015 Nature Genetics https://doi.org/10.1038/ng.3237 Nematoda Chromadorea Strongylida Haemonchus contortus 454, Illumina mate-pair 320 13 56 2013 Genome Biology https://doi.org/10.1186/gb-2013-14-8-r88 Nematoda Chromadorea Strongylida Haemonchus contortus Illumina, PacBio None 466 3 83971 2019 Genome Biology and Evolution https://doi.org/10.1093/gbe/evz141 Nematoda Chromadorea Strongylida Heterorhabditis bacteriophora Sanger, 454 None 77 102 312 2013 PLoS One https://doi.org/10.1371/journal.pone.0069618 Nematoda Chromadorea Strongylida Necator americanus 454 mate-pair 244 5 212 2014 Nature Genetics https://doi.org/10.1038/ng.2875 Nematoda Enoplea Mermithida Romanomermis culicivorax 454, Illumina mate-pair 323 2 18 2013 BMC Genomics https://doi.org/10.1186/1471-2164-14-923 Nematoda Enoplea Trichinellida Trichuris suis Illumina mate-pair 74 78 503 2014 Nature Genetics https://doi.org/10.1038/ng.3012 Nematoda Enoplea Trichinellida Trichuris suis Illumina mate-pair 71 86 444 2014 Nature Genetics https://doi.org/10.1038/ng.3012 Nematoda Enoplea Trichinellida Trichuris trichiura Illumina None 75 65 71 2014 Nature Genetics https://doi.org/10.1038/ng.3010 Nemertea Pilidiophora Heteronemertea Notospermus geniculatus 454, Illumina mate-pair 859 23 239 2018 Nature Ecology and Evolution https://doi.org/10.1038/s41559-017-0389-y Nemertea Phoronida - Phoronis australis 454, Illumina mate-pair 498 68 655 2018 Nature Ecology and Evolution https://doi.org/10.1038/s41559-017-0389-y Bryozoa Phylactolaemata - Cristatella mucedo Illumina, Nanopore, PacBio None 574 4116 4116 2019 ? Bryozoa Gymnolaemata Cheilostomatida Bugula neritina Illumina, PacBio None 215 94 94 2019 GIGA - FigShare https://doi.org/10.6084/m9.figshare.11396652.v1 Brachiopoda Lingulata Lingulida Lingula anatina 454, Illumina, PacBio None 425 53 294 2015 Nature Communications https://doi.org/10.1038/ncomms9301 Annelida Clitellata Haplotaxida Eisenia fetida Illumina None 1053 0 2 2016 Genome Biology and Evolution https://doi.org/10.1093/gbe/evv243 Annelida Clitellata Haplotaxida Eisenia fetida Illumina mate-pair 1472 1 9 2018 PLoS One https://doi.org/10.1371/journal.pone.0204234 Annelida Clitellata Haplotaxida Amynthas corticis Lineage A Illumina None 1017 1 1 2017 Applied Soil Ecology https://doi.org/10.1016/j.apsoil.2017.05.029 Annelida Clitellata Haplotaxida Amynthas corticis Lineage C Illumina None 459 0 0 2017 Applied Soil Ecology https://doi.org/10.1016/j.apsoil.2017.05.029 Annelida Clitellata Hirudinida Helobdella robusta Sanger None 235 52 3060 2013 Nature https://doi.org/10.1038/nature11696 Annelida Clitellata Hirudinida Hirudo medicinalis Illumina None 177 14 50 2020 Scientific Reports https://doi.org/10.1038/s41598-020-66749-5 Annelida Clitellata Hirudinida Hirudo medicinalis IonTorrent mate-pair 188 25 98 2020 BMC Genomics https://doi.org/10.1186/s12864-020-6748-0 Annelida Clitellata Hirudinida Hirudinaria manillensis Illumina, PacBio None 152 2278 2278 2020 Frontiers in Genetics https://doi.org/10.3389/fgene.2019.01321 Annelida Polychaeta Capitellida Capitella teleta Sanger None 333 22 188 2013 Nature https://doi.org/10.1038/nature11696 Annelida Polychaeta - Dimorphilus gyrociliatus Illumina, PacBio None 78 979 2242 2020 Nature Ecology and Evolution https://doi.org/10.1038/s41559-020-01327-6 Annelida Polychaeta Sabellida Lamellibrachia luymesi Illumina mate-pair 688 24 373 2019 BMC Biology https://doi.org/10.1186/s12915-019-0713-x Annelida Polychaeta Sabellida Hydroides elegans Illumina None 1026 6 17 2016 PNAS https://doi.org/10.1073/pnas.1603142113 Ctenophora Tentaculata Cydippida Pleurobrachia bachei 454, Illumina, IonTorrent mate-pair 156 6 21 2014 Nature https://doi.org/10.1038/nature13400 Ctenophora Tentaculata Lobata Mnemiopsis leidyi 454 mate-pair 156 12 187 2013 Science https://doi.org/10.1126/science.1242592 Ctenophora Nuda Beroida Beroe forskalii Illumina, Nanopore None 219 209 383 2020 PeerJ - Life and Environment https://doi.org/10.7717/peerj.8356 Ctenophora Nuda Beroida Beroe ovata Illumina None 194 1 1 2018 ? Xenacoelomorpha - - Hofstenia miamia Illumina mate-pair, Hi-C 950 14 1045 2019 Science https://doi.org/10.1126/science.aau6173 Tardigrada Eutardigrada Parachela Hypsibius dujardini Illumina None 253 16 16 2015 PNAS https://doi.org/10.1073/pnas.1510461112 Tardigrada Eutardigrada Parachela Ramazzottius varieornatus Sanger, llumina None 56 130 4740 2016 Nature Communications https://doi.org/10.1038/ncomms12808 Tardigrada Eutardigrada Parachela Hypsibius dujardini Illumina, PacBio None 104 77 342 2017 PLoS Biology https://doi.org/10.1371/journal.pbio.2002266 Platyhelminthes Cestoda Cyclophyllidea Echinococcus multilocularis Sanger, 454, Illumina optical mapping 115 11271 13762 2013 Nature Genetics https://doi.org/10.1038/ng.2757 Platyhelminthes Cestoda Cyclophyllidea Echinococcus granulosus 454, Illumina mate-pair 111 42 713 2013 Nature Genetics https://doi.org/10.1038/ng.2757 Platyhelminthes Cestoda Cyclophyllidea Hymenolepis microstoma Sanger, 454, Illumina None 127 79 652 2013 Nature https://doi.org/10.1038/nature12031 Platyhelminthes Cestoda Cyclophyllidea Hymenolepis microstoma Illumina, PacBio optical mapping 169 5805 25815 2020 BMC Biology https://doi.org/10.1186/s12915-020-00899-w Platyhelminthes Cestoda Cyclophyllidea Taenia solium 454, Illumina None 130 165 166 2016 Parasitology International https://doi.org/10.1016/j.parint.2005.11.020 Platyhelminthes Trematoda Strigeidida Schistosoma haematobium Illumina mate-pair 376 22 317 2012 Nature Genetics https://doi.org/10.1038/ng.1065 Platyhelminthes Trematoda Strigeidida Schistosoma haematobium PacBio Hi-C 371 56 4780 2019 GigaScience https://doi.org/10.1093/gigascience/giz108 Platyhelminthes Trematoda Strigeidida Schistosoma mansoni Sanger, Illumina genetic map 365 77 32115 2012 PLoS Neglected Tropical Diseases https://doi.org/10.1371/journal.pntd.0001455 Platyhelminthes Trematoda Strigeidida Schistosoma japonicum Sanger None 403 6 177 2009 Nature https://doi.org/10.1038/nature08140 Platyhelminthes Trematoda Strigeidida Schistosoma japonicum Illumina, PacBio None 370 872 1094 2019 PLoS Neglected Tropical Diseases https://doi.org/10.1371/journal.pntd.0007612 Platyhelminthes Trematoda Opisthorchiida Clonorchis sinensis Illumina None 547 233 417 2011 Genome Biology https://doi.org/10.1186/gb-2011-12-10-r107 Platyhelminthes Trematoda Opisthorchiida Clonorchis sinensis Illumina mate-pair 563 85 1629 2018 Biotechnology Advances https://doi.org/10.1016/j.biotechadv.2018.02.008 Arthropoda Hexanauplia Harpacticoida Tigriopus japonicus Illumina mate-pair, genetic map 197 71 10654 2020 Aquatic Toxicology https://doi.org/10.1016/j.aquatox.2020.105462 Arthropoda Hexanauplia Harpacticoida Tigriopus kingsejongensis Illumina, PacBio None 339 1294 1474 2020 Comparative Biochemistry and Physiology Part D: Genomics and Proteomics https://doi.org/10.1016/j.cbd.2020.100703 Arthropoda Hexanauplia Calanoida Acartia tonsa Illumina None 989 3 4 2019 Genome Biology and Evolution https://doi.org/10.1093/gbe/evz067 Arthropoda Arachnida Araneae Dysdera silvatica Illumina, PacBio None 1359 26 38 2019 GigaScience https://doi.org/10.1093/gigascience/giz099 Arthropoda Arachnida Araneae Nephila clavipes Illumina mate-pair 2439 8 63 2017 Nature Genetics https://doi.org/10.1038/ng.3852 Arthropoda Arachnida Araneae Parasteatoda tepidariorum Illumina Hi-C 1445 10 4055 2017 BMC Biology https://doi.org/10.1186/s12915-017-0399-x Arthropoda Arachnida Araneae Araneus ventricosus Illumina, Nanopore linked reads 3657 23 60 2019 Scientific Reports https://doi.org/10.1038/s41598-019-44775-2 Arthropoda Arachnida Scorpiones Centruroides sculpturatus Illumina None 925 52 337 2017 BMC Biology https://doi.org/10.1186/s12915-017-0399-x Arthropoda Arachnida Mesostigmata Varroa destructor Illumina Hi-C 369 202 58537 2019 Communications Biology https://doi.org/10.1038/s42003-019-0606-0 Arthropoda Arachnida Mesostigmata Varroa jacobsoni Illumina None 366 96 234 2019 Communications Biology https://doi.org/10.1038/s42003-019-0606-0 Arthropoda Arachnida Mesostigmata Tropilaelaps mercedesae Illumina None 353 13 29 2019 Communications Biology https://doi.org/10.1038/s42003-019-0606-0 Arthropoda Merostomata Xiphosura Carcinoscorpius rotundicauda Illumina Hi-C 1726 50 90264 2020 Communications Biology https://doi.org/10.1038/s42003-020-01637-2 Arthropoda Merostomata Xiphosura Carcinoscorpius rotundicauda Illumina, PacBio Hi-C 1669 7608 102344 2020 Nature Communications https://doi.org/10.1038/s41467-020-16180-1 Arthropoda Merostomata Xiphosura Tachypleus tridentatus Illumina Hi-C 1718 40 109789 2020 Communications Biology https://doi.org/10.1038/s42003-020-01637-2 Arthropoda Branchiopoda Diplostraca Daphnia pulex Sanger None 197 49 642 2011 Science https://doi.org/10.1126/science.1197761 Arthropoda Branchiopoda Diplostraca Daphnia pulex Illumina, Moleculo mate-pair 156 73 495 2017 G3: Genes, Genomes, Genetics https://doi.org/10.1534/g3.116.038638 Arthropoda Branchiopoda Diplostraca Eulimnadia texana Illumina, PacBio None 121 10428 18070 2018 Genome Biology and Evolution https://doi.org/10.1093/gbe/evx280 Arthropoda Insecta Hemiptera Halyomorpha halys Illumina mate-pair 1150 18 802 2020 BMC Genomics https://doi.org/10.1186/s12864-020-6510-7 Arthropoda Insecta Hemiptera Rhopalosiphum maidis Illumina, PacBio Hi-C 326 9046 93299 2019 GigaScience https://doi.org/10.1093/gigascience/giz033 Arthropoda Insecta Blattodea Cryptotermes secundus Illumina mate-pair 1019 64 1185 2018 Nature Ecology and Evolution https://doi.org/10.1038/s41559-017-0459-1 Arthropoda Insecta Coleoptera Nicrophorus vespilloides Illumina, PacBio optical mapping 195 68 122 2015 Genome Biology and Evolution https://doi.org/10.1093/gbe/evv194 Arthropoda Insecta Coleoptera Photinus pyralis Illumina, PacBio Hi-C 472 170 47018 2018 eLife https://doi.org/10.7554/eLife.36495.001 Arthropoda Insecta Coleoptera Ignelater luminosus Nanopore linked reads 843 31 96 2018 eLife https://doi.org/10.7554/eLife.36495.001 Arthropoda Insecta Ephemeroptera Cloeon dipterum Illumina, Nanopore None 180 435 461 2020 Nature Communications https://doi.org/10.1038/s41467-020-16284-8 Arthropoda Insecta Hymenoptera Apis dorsata Illumina, Nanopore None 224 31 35 2019 Genome Biology and Evolution https://doi.org/10.1093/gbe/evz277 Arthropoda Insecta Hymenoptera Crematogaster levior Illumina, Nanopore, PacBio None 326 256 383 2019 Genome Biology and Evolution https://doi.org/10.1093/gbe/evz159 Arthropoda Insecta Hymenoptera Lasioglossum albipes Illumina mate-pair 336 17 628 2013 Genome Biology https://doi.org/10.1186/gb-2013-14-12-r142 Arthropoda Insecta Hymenoptera Ooceraea biroi Illumina, PacBio, Nanopore Hi-C 224 3735 16888 2018 Genome Research https://doi.org/10.1101/gr.237123.118 Arthropoda Insecta Hymenoptera Cerapachys biroi 454, Illumina None 213 34 1351 2014 Current Biology https://doi.org/10.1016/j.cub.2014.01.018 Arthropoda Insecta Hymenoptera Apis mellifera PacBio linked reads, Hi-C, optical mapping 225 5382 13619 2019 BMC Genomics https://doi.org/10.1186/s12864-019-5642-0 Arthropoda Insecta Hymenoptera Apis mellifera Sanger, 454, Illumina, SOLiD None 250 46 997 2011 ? Arthropoda Insecta Diptera Drosophila melanogaster Illumina, Nanopore Hi-C 133 10730 24495 2020 Nucleic Acids Research https://doi.org/10.1093/nar/gkaa1026 Arthropoda Insecta Diptera Drosophila melanogaster Illumina, Nanopore Hi-C 142 6328 25701 2020 Nucleic Acids Research https://doi.org/10.1093/nar/gkaa1026 Arthropoda Insecta Diptera Drosophila bifasciata Illumina, Nanopore Hi-C 193 2386 48072 2020 G3: Genes, Genomes, Genetics https://doi.org/10.1534/g3.119.400922 Arthropoda Insecta Diptera Drosophila miranda Illumina, PacBio Hi-C, optical mapping 287 11978 35263 2018 PLoS Biology https://doi.org/10.1371/journal.pbio.2006348 Arthropoda Insecta Diptera Aedes aegypti Sanger None 1384 83 1547 2007 Science https://doi.org/10.1126/science.1138878 Arthropoda Insecta Diptera Aedes aegypti Illumina, PacBio linked reads, Hi-C, optical mapping 1279 11758 409778 2018 Nature https://doi.org/10.1038/s41586-018-0692-z Arthropoda Insecta Diptera Anopheles stephensi​ Illumina, PacBio Hi-C 243 38118 88748 2020 bioRxiv https://doi.org/10.1101/2020.05.24.113019 Arthropoda Malacostraca Decapoda Eriocheir sinensis Illumina, Nanopore Hi-C 1272 3161 17608 2020 GigaScience https://doi.org/10.1093/gigascience/giz161 Arthropoda Malacostraca Decapoda Procambarus virginalis Illumina, Nanopore Hi-C 3290 1 39 2018 Nature Ecology and Evolution https://doi.org/10.1038/s41559-018-0467-9 Arthropoda Malacostraca Amphipoda Parhyale hawaiensis Illumina None 4024 4 69 2016 eLife https://doi.org/10.7554/eLife.20062.001 Arthropoda Malacostraca Amphipoda Parhyale hawaiensis Illumina mate-pair, Hi-C 2753 20 20229 2018 ? Arthropoda Chilopoda Geophilomorpha Strigamia maritima 454 None 176 25 139 2014 PLoS Biology https://doi.org/10.1371/journal.pbio.1002005 Mollusca Gastropoda Stylommatophora Achatina immaculata Illumina, PacBio Hi-C 1653 3802 56367 2020 bioRxiv https://doi.org/10.1101/2020.02.02.930693 Mollusca Gastropoda Lepetellida Haliotis rubra Illumina, Nanopore None 1378 1178 1228 2019 Frontiers in Genetics https://doi.org/10.3389/fgene.2019.00889 Mollusca Gastropoda Lepetellida Haliotis rufescens Illumina, PacBio Hi-C 1499 284 1896 2019 Genome Biology and Evolution https://doi.org/10.1093/gbe/evz006 Mollusca Gastropoda Lepetellida Haliotis laevigata Illumina mate-pair 1763 3 81 2019 G3: Genes, Genomes, Genetics https://doi.org/10.1534/g3.119.400388 Mollusca Gastropoda Peltospiridae Chrysomallon squamiferum Illumina, Nanopore Hi-C 405 1883 30197 2020 Nature Communications https://doi.org/10.1038/s41467-020-15522-3 Mollusca Gastropoda Pteropoda Limacina bulimoides Illumina None 2902 1 1 2020 BMC Genomics https://doi.org/10.1186/s12864-019-6372-z Mollusca Gastropoda Neogastropoda Conus tribblei Illumina None 2160 1 3 2016 Molecular Genetics and Genomics https://doi.org/10.1007/s00438-015-1119-2 Mollusca Gastropoda Neogastropoda Conus consors 454, Illumina mate-pair 2049 1 1 2019 bioRxiv https://doi.org/10.1101/590695 Mollusca Gastropoda - Lottia gigantea Sanger None 360 96 1870 2013 Nature https://doi.org/10.1038/nature11696 Mollusca Gastropoda - Biomphalaria glabrata Sanger, 454, Illumina genetic map 916 7 48 2017 Nature Communications https://doi.org/10.1038/ncomms15451 Mollusca Gastropoda - Biomphalaria glabrata PacBio None 768 395 395 2020 eLife https://doi.org/10.7554/eLife.59395 Mollusca Gastropoda - Biomphalaria glabrata PacBio None 811 743 743 2020 eLife https://doi.org/10.7554/eLife.59395 Mollusca Gastropoda - Biomphalaria glabrata PacBio None 852 2598 2598 2020 eLife https://doi.org/10.7554/eLife.59395 Mollusca Gastropoda - Elysia chlorotica Illumina, PacBio mate-pair 557 30 442 2019 Scientific Data https://doi.org/10.1038/sdata.2019.22 Mollusca Gastropoda - Radix auricularia Illumina mate-pair 910 24 579 2017 Genome Biology and Evolution https://doi.org/10.1093/gbe/evx032 Mollusca Gastropoda - Lymnaea stagnalis Illumina mate-pair 833 6 6 2016 Current Biology https://doi.org/10.1016/j.cub.2015.12.071 Mollusca Gastropoda Architaenioglossa Marisa cornuarietis Illumina, Nanopore None 535 4359 4359 2019 Molecular Biology and Evolution https://doi.org/10.1093/molbev/msz084 Mollusca Gastropoda Architaenioglossa Lanistes nyassanus Illumina mate-pair 507 26 318 2019 Molecular Biology and Evolution https://doi.org/10.1093/molbev/msz084 Mollusca Gastropoda Architaenioglossa Pomacea maculata Illumina mate-pair 432 76 376 2019 Molecular Biology and Evolution https://doi.org/10.1093/molbev/msz084 Mollusca Gastropoda Architaenioglossa Pomacea canaliculata Illumina mate-pair 447 81 32645 2019 Molecular Biology and Evolution https://doi.org/10.1093/molbev/msz084 Mollusca Gastropoda Architaenioglossa Pomacea canaliculata Illumina, PacBio Hi-C 440 1073 31531 2018 GigaScience https://doi.org/10.1093/gigascience/giy101 Mollusca Bivalvia Veneroida Cyclina sinensis Illumina, PacBio linked reads, Hi-C 903 2587 46470 2020 ISCIENCE https://doi.org/10.1016/j.isci.2020.101148 Mollusca Bivalvia Veneroida Lutraria rhynchaena Illumina, Nanopore None 544 2144 2144 2019 Frontiers in Genetics https://doi.org/10.3389/fgene.2019.01158 Mollusca Bivalvia Veneroida Dreissena rostriformis Illumina mate-pair 1242 46 131 2019 DNA Research https://doi.org/10.1093/dnares/dsz019 Mollusca Bivalvia Veneroida Ruditapes philippinarum Illumina mate-pair 1123 29 345 2019 ISCIENCE https://doi.org/10.1016/j.isci.2019.08.049 Mollusca Bivalvia Veneroida Sinonovacula constricta Illumina, PacBio linked reads, Hi-C 1221 977 65929 2019 Molecular Ecology Resources https://doi.org/10.1111/1755-0998.13086 Mollusca Bivalvia Veneroida Sinonovacula constricta Illumina, PacBio Hi-C 1332 680 57991 2019 bioRxiv https://doi.org/10.1101/735142 Mollusca Bivalvia Pectinoida Pecten maximus PacBio linked reads, Hi-C 918 1259 44824 2020 Genome Biology and Evolution https://doi.org/10.1093/gigascience/giaa037 Mollusca Bivalvia Pectinoida Argopecten irradians irradians Illumina, PacBio None 836 79 1533 2020 Scientific Data https://doi.org/10.1038/s41597-020-0441-7 Mollusca Bivalvia Pectinoida Argopecten irradians concentricus Illumina, PacBio None 875 64 1247 2020 Scientific Data https://doi.org/10.1038/s41597-020-0441-7 Mollusca Bivalvia Pectinoida Patinopecten yessoensis Illumina mate-pair 988 65 804 2017 Nature Ecology and Evolution https://doi.org/10.1038/s41559-017-0120 Mollusca Bivalvia Mytiloida Bathymodiolus platifrons Illumina mate-pair 1658 13 343 2017 Nature Ecology and Evolution https://doi.org/10.1038/s41559-017-0121 Mollusca Bivalvia Mytiloida Modiolus philippinarum Illumina mate-pair 2630 18 100 2017 Nature Ecology and Evolution https://doi.org/10.1038/s41559-017-0121 Mollusca Bivalvia Mytiloida Limnoperna fortunei Illumina, PacBio mate-pair 1673 32 309 2018 GigaScience https://doi.org/10.1093/gigascience/gix128 Mollusca Bivalvia Mytiloida Mytilus galloprovincialis Illumina None 1500 3 3 2016 PLoS One https://doi.org/10.1371/journal.pone.0151561 Mollusca Bivalvia Mytiloida Mytilus coruscus Illumina, Nanopore None 1904 817 898 2020 Frontiers in Genetics https://doi.org/10.3389/fgene.2020.00440 Mollusca Bivalvia Ostreoida Crassostrea gigas Sanger, Illumina mate-pair 558 31 402 2012 Nature https://doi.org/10.1038/nature11413 Mollusca Bivalvia Ostreoida Crassostrea gigas Illumina, PacBio genetic map, Hi-C 648 1564 58463 2020 bioRxiv https://doi.org/10.1101/2020.09.25.313494 Mollusca Bivalvia Ostreoida Crassostrea gigas Illumina, Nanopore None 588 582 582 2019 Frontiers in Genetics https://doi.org/10.3389/fgene.2019.01211 Mollusca Bivalvia Ostreoida Crassostrea virginica PacBio None 685 1971 75944 2017 Fish & Shellfish Immunology https://doi.org/10.1016/j.fsi.2015.05.004 Mollusca Bivalvia Ostreoida Saccostrea glomerata Illumina mate-pair, Hi-C 788 40 804 2018 DNA Research https://doi.org/10.1093/dnares/dsy032 Mollusca Bivalvia Unionida Venustaconcha ellipsiformis Illumina, PacBio mate-pair 1590 3 7 2018 Genome Biology and Evolution https://doi.org/10.1093/gbe/evy117 Mollusca Cephalopoda Teuthida Architeuthis dux Illumina, Moleculo, PacBio Hi-C 2694 5 4853 2020 GigaScience https://doi.org/10.1093/gigascience/giz152 Mollusca Cephalopoda Sepiolida Euprymna scolopes Illumina mate-pair, Hi-C 5280 4 3550 2019 PNAS https://doi.org/10.1073/pnas.1817322116 Mollusca Cephalopoda Octopoda Octopus bimaculoides Illumina mate-pair 2338 6 475 2015 Nature https://doi.org/10.1038/nature14668 Mollusca Cephalopoda Octopoda Octopus vulgaris Illumina None 1773 3 266 2019 Scientific Data https://doi.org/10.1038/s41597-019-0017-6 Mollusca Cephalopoda Octopoda Octopus sinensis Illumina, PacBio Hi-C 2719 490 105893 2020 Molecular Ecology Resources https://doi.org/10.1111/1755-0998.13216 Mollusca Polyplacophora Chitonida Acanthopleura granulata Illumina, Nanopore optical mapping 607 1099 23921 2020 Genome Biology and Evolution https://doi.org/10.1093/gbe/evaa263 Porifera Demospongiae Haplosclerida Amphimedon queenslandica Sanger None 167 12 120 2010 Nature https://doi.org/10.1038/nature09201 Porifera Demospongiae Haplosclerida Amphimedon queenslandica Illumina Hi-C 168 11 950 2020 ? Porifera Demospongiae Spongillida Ephydatia mulleri PacBio Hi-C 323 212 9884 2020 Nature Communications https://doi.org/10.1038/s41467-020-17397-w