#NEXUS

[!
	Tree distance data from Gordon EL, Kimball RT & Braun EL. Protein structure, models 
	of sequence evolution, and data type effects in phylogenetic analyses of mitochondrial 
	data: A case study in birds.
	
	This nexus distance matrix contains the matching distances calculated in PAUP* after
	reducing the trees to the "supertree" taxon set.
]

Begin Distances;
	Dimensions Newtaxa NTax = 17 ;
	Format Triangle = Lower nodiagonal ;
Matrix
[1] mtTM_aa         
[2] mtExM_aa			    223   
[3] mtALL_aa			    179 175   
[4] mtVer_TM_aa			    146 221 127   
[5] mtVer_ExM_aa		    213 156 179 194   
[6] mtVer_ALL_aa		    172 152 133 164 160   
[7] partitioned_aa		    159 168 113 136 156 106   
[8] birdMIX_aa			    168 175 109 144 182 128 137   
[9] mtTM_nt				    153 233 193 202 213 173 191 157   
[10] mtExM_nt			    166 206 176 195 176 173 158 151 141   
[11] mtALL_nt_3part		    170 240 199 188 228 195 190 173  84 140   
[12] mtALL_nt_6part		    164 240 179 196 204 190 178 170  87 105  67   
[13] mtTM_RY		        158 229 188 197 221 172 190 150  75 146 100  97   
[14] mtExM_RY			    200 218 197 217 208 204 197 174 133 110 135 114 156   
[15] mtALL_RY_3part		    175 250 200 208 215 200 181 188 103 111  85  54 123 100   
[16] mtALL_RY_6part		    161 237 186 200 203 190 173 176  98  98  92  43 115  87  22   
[17] Kimball_supertree	    189 184 156 191 149 153 131 159 183 167 200 194 180 194 194 182   
	;
End;
