In this paper, we propose an efficient numerical method to solve the diffusive logistic model with a free boundary which is often used to simulate the spreading of the new or invasive species. The boundary movement is tracked by the level-set method, where the Hamilton-Jacobi weighted essentially nonoscillatory (HJ-WENO) scheme is utilized to capture the boundary curve embedded by the Cartesian grids via the embedded boundary method. Then the radial basis function-finite difference (RBF-FD) method is adopted to the spatial discretization and the IMEX scheme is considered for time integration. A variety of numerical examples are carried out to demonstrate the evolution of diffusive logistic model in different initial boundaries.